2024-05-02 23:16:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030253725 2427 bp mRNA linear ROD 10-APR-2023 DEFINITION PREDICTED: Mus musculus Fanconi anemia core complex associated protein 20 (Faap20), transcript variant X1, mRNA. ACCESSION XM_030253725 VERSION XM_030253725.2 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000070.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 21, 2020 this sequence version replaced XM_030253725.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/05/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2427 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="4" gene 1..2427 /gene="Faap20" /gene_synonym="2610002J02Rik" /note="Fanconi anemia core complex associated protein 20; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 170 ESTs, 99 long SRA reads, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns" /db_xref="GeneID:67513" /db_xref="MGI:MGI:1914763" CDS 1291..1782 /gene="Faap20" /gene_synonym="2610002J02Rik" /codon_start=1 /product="Fanconi anemia core complex-associated protein 20 isoform X1" /protein_id="XP_030109585.1" /db_xref="GeneID:67513" /db_xref="MGI:MGI:1914763" /translation="
MEEERRLRGRLSRRRPPAGGGPPNCRPWFLSEGSKSEPWAALLRSTVSGTADWTPNRQPLPPLPAFPSQESLPDPESTVPPEAFTVGSKTFSWTPLPPALRGSGSSRHLFCEPEGSLGSPTPSLKGCPALNSGRTPSAQECVPVQSPLALLSCPLCQKAFDPN"
misc_feature 1390..1725 /gene="Faap20" /gene_synonym="2610002J02Rik" /note="FAAP20 FANCA interaction domain; Region: FANCA_interact; pfam15751" /db_xref="CDD:434907" ORIGIN
gtcctgcatggtttcatgtcaattctgagaactgacctcaggcccttatgcttgcatagacactttgcctactgagtcacctccctagcccaaattcaactttttgttttgttttgtttgagacaggatctttcttcatagccctgctttcctggaactcactccataaaccaaactcatagagatcctcctgtctctgcctcctgggtactgggatgaaaggtctgtgccagtgttcttgcaaaggattcaggttcatttcctagcacccacatggtagctcacaactgtctgtaaccacagttctaggcggtccaagacctttttccaatctctgtgggcaccagacacatacggcacaaatacatgcgctctccgagattaaacttgctcttcctcttcaagtctgcagagacagaagacaaccttagtgcagaaaccatccccagaccctggtctagacacaacttccaggatgtggaacctggaagtacacacggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatctcacctaaggatggggtgcaaagctctgactggaggaagacccaggaaaagggtctgcgagtcagatggttgcaggacaggcgtttggaacggccctgacccctgggggctgtgaagtagaaagctactagcgaatcccaatgcgtacatcaaagtgcctggacttttgctgccaccaagtgatgggctgcaggattgcaggacgggatattggttaggtaggaagcccgggtttttcactctgagccttcgtcccctgggctttgcggtttgattgctcttctctttggtagaaaaacccagttcctcctttaagaagaagatgctggcaaaactgggcctgagaatttggtcctatccatggggccttcctgaaaaagactacagaactggaaactgaggcagggcattgtctgggaggtgccaccggcagggcaagcctgacagctctctgcacgtgttgacggaagggagcccaggctctgcacaggctcgagtggcccaatctcgcacccctgcaaactggagggcagctccgccctgtcccgcctctccctcaaggcggcagcctcgtgttcccaacggttgggatctcggcgccttagatttccagcgccacaaaggggagctggcacttggcagagcggagagtggggggggtctggaagccgccggagcggatcccggtcggagggcgggccgggctgtaagtctcacttccgccggacgctgtttggagaaggatggaggaggagcggagactgcgggggaggctgagccgtcggaggccgcccgcggggggcgggccccctaactgccgcccttggtttctctcggagggaagtaagagtgagccctgggctgctctgttgcgcagcaccgtgagcgggaccgcggattggaccccgaaccgtcagccattaccaccgctgcctgcttttcccagccaggagtctctacctgacccagagtccactgtgcctcctgaggccttcactgtgggatccaagactttctcctggacgcctttgccacctgcccttcgtggctctggaagctcccgccacctgttctgtgaacctgaaggctccctggggtcacctactccatccctgaaaggatgccctgcactaaattctggtcgaactcccagcgcccaggagtgtgtgcctgtgcagagtccacttgcgttgctgagttgcccgttgtgccagaaggcgtttgacccgaactgactggccatgggagagcccagaactcttctcggggcttcagaacttggtggaggcccttcctgtgcctggtgacagtttcttctcccctgtaggctgacccagctagatgtggatagccaccttgctcagtgcttggctgagtgcaccgaagatgtggtgtggtgagcatcagggtgccttgctgtatctccttcaaacctacacaccgacattggatgtggcttctgagacatcgtcgtgtggacacctgagtattggctccttctggttttgttcatgggcattggacataatgctggtcactgacagcaggcagcactgatcctctgtggactcatcttcattgtcagcctgacaggatgtggaatcacccaggagacacatctcaggtgtgcctgtgaaaccgttcccagagattacctgggacaggaagtcccagctgaatgtgggtggcaccgtggcctggggtcccactgattgaaaagggaaaatggagaaattgagctgtttcctcactggggatgtgatgagatgcaccgctcgcctgctacggcagccatagctacttttgctactgtgccctccttgccacagggactgtaccttaactgtgagccagaataaattttaagttgctttccagta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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