2024-05-03 09:36:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030251327 1172 bp mRNA linear ROD 10-APR-2023 DEFINITION PREDICTED: Mus musculus transcription elongation factor A (SII)-like 1 (Tceal1), transcript variant X2, mRNA. ACCESSION XM_030251327 VERSION XM_030251327.1 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000086.8) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/05/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1172 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="X" gene 1..1172 /gene="Tceal1" /gene_synonym="0610011M09Rik; P21; pp21; SIIR" /note="transcription elongation factor A (SII)-like 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 ESTs, 25 long SRA reads, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns" /db_xref="GeneID:237052" /db_xref="MGI:MGI:2385317" CDS 109..606 /gene="Tceal1" /gene_synonym="0610011M09Rik; P21; pp21; SIIR" /codon_start=1 /product="transcription elongation factor A protein-like 1 isoform X1" /protein_id="XP_030107187.1" /db_xref="GeneID:237052" /db_xref="MGI:MGI:2385317" /translation="
MENTRSENEEQPESTLKIDEEQPAVEQSPENQCSEEDQSSEDLSSEEQSSEEEFFPEELLPELLPEMLLSEDRPPQECLSQKNQFEDRIPMEQPPCGVGKHKLEEGSFKERLARIRPQFIGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"
misc_feature <385..603 /gene="Tceal1" /gene_synonym="0610011M09Rik; P21; pp21; SIIR" /note="Brain expressed X-linked like family; Region: BEX; pfam04538" /db_xref="CDD:427996" ORIGIN
cccacggttttggtagagaaaatggtggtcttgggagtggggtggggtacaaaggacgtggagacgtgaggtctgaggaagaataattgcttgaagaaacttctcaacatggaaaacacgcgcagtgaaaatgaagagcaaccagagagcactctgaagatcgatgaagagcagcctgcagtggagcagtctcctgaaaatcagtgctctgaggaggatcaatcctcggaggatctgtcctccgaggagcagtcctccgaggaggagttctttcctgaagagctcctgcccgagctgctcccagagatgctgctgtctgaagatcgtcctccgcaggagtgcctctcacagaagaaccagttcgaagaccgtattcccatggagcaacctccctgcggggtgggcaaacacaagctagaggagggaagcttcaaagaaagactggcccgtatccgccctcaattcataggagacattcatggcagaaatttaagtaatgaagaaatgatacaggcagcggatgagttggaagagatgaagagagtacgaaacaaactgatgataatgcattggaaggcaaaacggagccgcccttaccctatttaatatgctccacttttcattgttttgcttgttaatagcatttgctacctggcccttgtgtttgcatcttcttatatgccctttcccatcttagttgtaacagttttattcaggttgtgcagttttatttcaagtgtttgacatgtaactggcacgggtctttgtttttgtttttgttttcagaccttctaaaatctgagtgtgatccatttgcatggaaagatatacattatatatgtgaggtgataaaagcaaaaggtatatgcatagcatcccatttttgtaaaaggaaaacacatttatatattaatatgcaaagaaaagctaaaaactatatacttaaagactaacattggttatctgtgtggtaaagataataagtgatttttatatttttttaaattttgctttatctaaagtttcatttttcatgatgaatacattttatttatgttgcacaacaaacaatataatgaaaaatgtgaagcaagcctaaaatcaaaaagtgttagtcagcttataaagaaaatgtgctccttaataaatatttatcagaacttaaaagttaa
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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