2024-05-03 07:16:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030243286 780 bp mRNA linear ROD 10-APR-2023 DEFINITION PREDICTED: Mus musculus spermatogenesis associated 45 (Spata45), transcript variant X1, mRNA. ACCESSION XM_030243286 VERSION XM_030243286.2 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000067.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 21, 2020 this sequence version replaced XM_030243286.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001635.27-RS_2023_04 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.1 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 04/05/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..780 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="1" gene 1..780 /gene="Spata45" /gene_synonym="1700022P22Rik" /note="spermatogenesis associated 45; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:75558" /db_xref="MGI:MGI:1922808" CDS 386..736 /gene="Spata45" /gene_synonym="1700022P22Rik" /codon_start=1 /product="spermatogenesis-associated protein 45 isoform X1" /protein_id="XP_030099146.1" /db_xref="GeneID:75558" /db_xref="MGI:MGI:1922808" /translation="
MLNVLAGRQDSADHWCVVKMTSMNKGNEEKTQGANRKQLLEELNEKRESYCLVERSNEVNLLRVQKRHFSKAYQTLACMHIKESVPESTRTSWVKHDLSVHKEKRHFLPKNNAIFG"
ORIGIN
tcttaatgggccctttcattttactgtgtttaaaccgtggtagatattgtaaaagataatactacagatatacagataaaaaggctctaagctcacagatttcccaaagtggacagataaaatgggaaagatgcatccatcagccagggagatagaaacataccctgctggtgggcctgtcttagatcagacaccagttatcgtgacaggcaaatacaacatgacttgttggacatagctgaactttgcagtatttggggggcagtaatgacctgagttggttctgtaccacattttggagcatggtcttgcagaaggagaaagtcctggtagatgtggttatgaggtgaagtttgcttctgagttggacagaagactattaagcatgctcaatgtgttggcagggcggcaagactcagctgaccactggtgtgttgtaaagatgacatccatgaacaagggcaacgaagagaagacacagggagcgaacaggaagcagcttctggaagagttgaacgagaagcgcgagtcctactgcctggtggaaagaagcaacgaagtcaacctgctgagagttcagaagaggcacttcagcaaggcctaccagaccttagcttgcatgcatatcaaagaatctgttcccgaaagtaccaggacctcctgggtcaagcatgatctctctgtgcacaaggagaaaaggcactttctgccaaaaaataatgccatatttggatgaagtatatctccagagacacacaaataaactctctttcatcagtc
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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