LOCUS       XM_017315770            1888 bp    mRNA    linear   ROD 07-FEB-2024
DEFINITION  PREDICTED: Mus musculus cytoplasmic polyadenylated homeobox 1
            (Cphx1), transcript variant X2, mRNA.
ACCESSION   XM_017315770
VERSION     XM_017315770.1
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000080.7) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/01/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="14"
     gene            1..1888
                     /gene="Cphx1"
                     /gene_synonym="C330003B14Rik; Cphx; Cphx2; Cphx3; Eso-1;
                     Gm2104; Gm2135"
                     /note="cytoplasmic polyadenylated homeobox 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 mRNAs, 48 ESTs, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:105594"
                     /db_xref="MGI:MGI:2145733"
     CDS             271..819
                     /gene="Cphx1"
                     /gene_synonym="C330003B14Rik; Cphx; Cphx2; Cphx3; Eso-1;
                     Gm2104; Gm2135"
                     /codon_start=1
                     /product="cytoplasmic polyadenylated homeobox 1 isoform
                     X1"
                     /protein_id="XP_017171259.1"
                     /db_xref="GeneID:105594"
                     /db_xref="MGI:MGI:2145733"
                     /translation="

MLSKNFPGAPETKDNRSKARKRYGSRNSKPRHKFSRDELKRLKQEFAYAPYPDFTTKDELARQFQCEVSVIDNWFQNKRARLAPELKSKISAMRRMRRCQDYMRTGHQDTQPPKASGEQYSSCDSVVRSIGRQSIGTVEHQGAAGRESSFRPTNFTFPPVYEQYYMGDQLETQETQYFTFSY"

     misc_feature    355..516
                     /gene="Cphx1"
                     /gene_synonym="C330003B14Rik; Cphx; Cphx2; Cphx3; Eso-1;
                     Gm2104; Gm2135"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(355..366,370..372,421..423,439..441,478..480,
                     484..489,496..501,505..513)
                     /gene="Cphx1"
                     /gene_synonym="C330003B14Rik; Cphx; Cphx2; Cphx3; Eso-1;
                     Gm2104; Gm2135"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(358..360,367..369,487..489,496..501,508..510)
                     /gene="Cphx1"
                     /gene_synonym="C330003B14Rik; Cphx; Cphx2; Cphx3; Eso-1;
                     Gm2104; Gm2135"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
ORIGIN      

ttttttcaagacagagtttctccgtgtggccttggctgtcctagaatacacgcagtagaccaggctgcagtcaaatgtccagacacccacctacctctgcctcccaagtgctgggattaaaggtgtgcaccatcaccaccacctggcatctttctccgttttaaaagggctggcattaagggcaggtgacacaatcttctccaccacccggctctctctcagcctcttgagtagcttggaattacaggtctgagattggaggtttccagcatgctttcaaaaaattttcctggcgctccagaaacaaaagacaatcgcagcaaagcaagaaagcgatatggaagcagaaactcaaaaccgagacataaattttccagagatgagctgaagagacttaaacaagaatttgcatacgctccttacccggacttcaccaccaaggatgagctggcccggcagttccagtgtgaagtgagcgtgattgacaactggtttcagaataaaagagccagattggcaccagaattgaaaagcaaaatttctgccatgagaagaatgcgcaggtgccaagactacatgcgtacaggtcaccaggatacccagcccccaaaagcttctggtgaacagtacagctcatgtgactctgtggtccgaagcatcggaaggcaatcaattggcactgtggagcatcaaggggccgctggaagggaatcttctttcagaccaacaaactttacttttccccctgtgtatgagcagtattatatgggtgaccagcttgagacacaggaaacccaatatttcacattctcttactgacaatgttccttgtaggcaggggcaaaggtgggtggattgtaactgttccccaatgctcccaggacagcagcagaataactgggaatatcagcaaccactgcagcatcctcagagctaccaagagagggtcccgatggcagactggctcgttgtacaccagagtcagagagatggagacacagcaggcactcagatgctccttggccagctgcagtcagtgttccaccaaatgctgctttggctacatgggcagcaagggactgctgacagtgttactcctcaggagagcagtcctgtcaaaacacacaagcttcaggaatttagaaagcagcatgaggggctaaagtggagtccaggagtctcaacaaagatccagggttcccatgagtgattctagaagaggaaggttgtgaccttgtcctagctataagcctttttttttttttccttcccctcactgtcaggcatatcaatgcttttaacttctatggaccagattggccaatcttctaggactcctggcaggtgctgttagaaaaaaggaaagcgcagggccagcttgtccaatccagcctccagggcctcagtagccagtggcagcctaaggggctttgaccttctcagtggctccaagtctgagggaggtctgacatcatgttccccagagtattgagctcctgggtcagctgtcagagcctagctacaagtttagatggtcactattggactgttccaattttagatgtagtggagagagttatccagagagccagtgctcatttggccaaataggcaaataagaagtttacccttgttaacctggaggttattattgttaatgtcttcccctcctaactcccttgagggttttttgttttattttatcttaggatgctgcttagattattagaggttttatttctagaggagacaatcaactgttgtaacactttataagacgtgaaaaggtggagggagtgtattcagagtatgagactgtgaatacacattgtatacaagtgttacgttgtccaagaatgaataaaagatattaacttccaaaccaaaa

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