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2024-05-03 03:11:51, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_006533448             864 bp    mRNA    linear   ROD 10-APR-2023
DEFINITION  PREDICTED: Mus musculus B9 protein domain 1 (B9d1), transcript
            variant X2, mRNA.
ACCESSION   XM_006533448
VERSION     XM_006533448.3
DBLINK      BioProject: PRJNA169
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000077.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 8, 2019 this sequence version replaced XM_006533448.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001635.27-RS_2023_04
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 04/05/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6J"
                     /db_xref="taxon:10090"
                     /chromosome="11"
     gene            1..864
                     /gene="B9d1"
                     /gene_synonym="B9; Eppb9"
                     /note="B9 protein domain 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 128 long SRA reads, 1 Protein, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 19 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:27078"
                     /db_xref="MGI:MGI:1351471"
     CDS             397..729
                     /gene="B9d1"
                     /gene_synonym="B9; Eppb9"
                     /codon_start=1
                     /product="B9 domain-containing protein 1 isoform X1"
                     /protein_id="XP_006533511.1"
                     /db_xref="GeneID:27078"
                     /db_xref="MGI:MGI:1351471"
                     /translation="
MMTSTASTALCMARTGPQQRHKRTIPMFVPESTSTLQKFTSWFMGRRPEYTDPKVVAQGEGREVTRVRSQGFVTLLFNVVTKDMKKLGYDTGPVDTQGVLGPSLPQGNPQ"
     misc_feature    <454..636
                     /gene="B9d1"
                     /gene_synonym="B9; Eppb9"
                     /note="Ciliary basal body-associated, B9 protein; Region:
                     B9-C2; pfam07162"
                     /db_xref="CDD:429326"
ORIGIN      
ggtctcccggcccatcagtgcaatggctgcagcaagtcccagcgtcttcctgctcatgatcaccgggcaggtagagagcgcacaggtaagcagtcgtggactccgcccggggacggcctgtttctctccccgggctcttcgctcagctcctagaaagccaagatgctctgagcatctcaaataaatggaaaggagaagcagcatttgagaaccttggctccaggtagatgaaccggacaagcttgagtgaaaacagacctcgaggcgttcagctggtaccacttggatcctgtttacttggttgagtggtggcctaggactaatgggactgaagactcagctgatccatttaacagctgggaacttaccggaaggcagtggccaagtttccagagtatgatgacctctactgcaagtactgctttgtgtatggccaggactgggccccaacagcggcacaaaaggaccatccccatgtttgtgccagagtctacatctacactacagaagttcacaagctggttcatgggacggcgacccgagtacacagaccccaaggtggtggcccagggtgaaggccgggaagtgactcgtgttcgctctcagggatttgttaccctcctcttcaatgtggtgaccaaggacatgaagaagctgggctatgatactgggcctgtggacacacaaggagtcctgggtcctagcctgccacagggcaacccacaataaaaatcagcccttctgtccgccactgtggaccagatgccctacagcccacacacagccaaggacatgccaaccaggctgggaaacaggggagctaaaggtagttttatataataaagtgtcacatgtttttcagag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]