2024-09-28 11:19:11, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NR_177927 2197 bp RNA linear ROD 08-AUG-2023 DEFINITION Mus musculus GC-rich sequence DNA binding factor 2 (Gcfc2), transcript variant 6, non-coding RNA. ACCESSION NR_177927 VERSION NR_177927.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2197) AUTHORS Ma Y, Ren Y and Guan J. TITLE Knockdown of GC binding factor 2 by RNA interference inhibits invasion and migration of vascular smooth muscle cells JOURNAL Mol Med Rep 20 (2), 1781-1789 (2019) PUBMED 31257544 REMARK GeneRIF: The inhibition of vascular smooth muscle cells proliferation and migration by knockdown of GCF2 by RNA interference was mediated by the PI3K/AKT signaling pathway. REFERENCE 2 (bases 1 to 2197) AUTHORS Maga AM, Navarro N, Cunningham ML and Cox TC. TITLE Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico JOURNAL Front Physiol 6, 92 (2015) PUBMED 25859222 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 2197) AUTHORS Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S, Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N, Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y, Okado H, Hashimoto M and Asahara H. TITLE A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58 JOURNAL Dev Cell 17 (6), 836-848 (2009) PUBMED 20059953 REFERENCE 4 (bases 1 to 2197) AUTHORS Ballif BA, Villen J, Beausoleil SA, Schwartz D and Gygi SP. TITLE Phosphoproteomic analysis of the developing mouse brain JOURNAL Mol Cell Proteomics 3 (11), 1093-1101 (2004) PUBMED 15345747 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC129024.4. ##Evidence-Data-START## Transcript exon combination :: SRR13422598.1296719.1, SRR13422600.53879.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849382, SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-260 AC129024.4 86410-86669 c 261-389 AC129024.4 84454-84582 c 390-614 AC129024.4 79456-79680 c 615-712 AC129024.4 77437-77534 c 713-828 AC129024.4 74327-74442 c 829-1015 AC129024.4 70782-70968 c 1016-1139 AC129024.4 68907-69030 c 1140-1221 AC129024.4 67338-67419 c 1222-1334 AC129024.4 66807-66919 c 1335-1448 AC129024.4 65828-65941 c 1449-1599 AC129024.4 63735-63885 c 1600-2197 AC129024.4 61488-62085 c FEATURES Location/Qualifiers source 1..2197 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="6" /map="6 35.81 cM" gene 1..2197 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /note="GC-rich sequence DNA binding factor 2" /db_xref="GeneID:330361" /db_xref="MGI:MGI:2141656" misc_RNA 1..2197 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /product="GC-rich sequence DNA binding factor 2, transcript variant 6" /db_xref="GeneID:330361" /db_xref="MGI:MGI:2141656" exon 1..260 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" misc_feature 29..1357 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_177884.4" /note="primary ORF has stop codon >50 nucleotides from the terminal splice site; nonsense-mediated decay (NMD) candidate" exon 261..389 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 390..614 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 615..712 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 713..828 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 829..1015 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1016..1139 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1140..1221 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1222..1334 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1335..1448 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1449..1599 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1600..2197 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" ORIGIN
aaggagacgcgccaatcctacttggaacatggctctcaggccccagaggactttcaggcggcgccaggtcgagtccagcgatagcgatagcgatagcgacggcgcgaaggagcagagtgcggaggagccggcgtctgccggcggccgaacagagggagcggagcggccgcgcggggcccgcagcgcccggggccgaggtcgggtctgggcgagttcccgccgcagcccgggagctgctccccgcggggacggcggagcagaatgcagaacagctgagctctcaacggatgaagaggaaggaacacataccttgacaggaagtaagggtgatcggagtccgtcctctgatagctcttgctctctggaagaaagagacgtttcacccatagttgagatccccgatgcagcttttattcaggcagcccgcagaaaacgggagttggccaggaccccaggggactacatttcattggatgtaaaccactcctgctccacttctgactgtaagagaagcaatgaagaggacccagagagcgatcctgatgaccacgaaaagagaatactgtttaccccaaagcctcaaacactccggcaaagaatggctgaagaaacgtcaatcaggagtgaggaatcaagtgaagagagtcaggaagatgaaaaccaagacatctgggagcagcagcagatgaggaaagcagtcaggatcccggcgggacaaaatacagacctttcccacagcagtaagtctcaaaccctgaagaagtttgatacttccatttcatttccaccggtaaatttggaaattataaagaaacagttaaataatagattaacattactacaggagtctcatcgctcacaccagagagaatatgaaaaatatgaacaagacatcaagagttcaaagacggctatccagaatcttgagagtgcatcagaccatgctcaaaactacagattctacaggggcatgaaaagttatgtggaaaatataattgattgtctaaatgaaaagattgtcagcattgtggaactagaatcatccatgtacacgttgcttttaaaacggtcagaagcacttttgaaacgcaggcaagatgaattaaaatgcgaatcatcatatttgcagcagttatcacgcaaagatgagacatcggcaaatggaagcttggctgtggatgaaaaggatcaacggattttagaagagattgaagctcggaggatgcagagaagacaggccagggagctctcgggcagctgtgaccatcaggaagggatgtctagtgatgatgagctgtctcctgcagagatgactaacttccacaagtgccaagcagtggcgagaaaagtttcctgattcctactatgaagccttcgttggtttctgcttaccaaagcttttaagtcccctgatacgagttcagttgcttgactggaatcctcttaagatggactccataggtctagacaagatgccctggttcacagctataacagagtttatggagagcagcatggacgatatagggaaggaagatggttctgataaaaaaatcttggctgctgtcatcaacaaaacagttgttcctcgacttacagattttgtagagaccatttgggatcccctgtcaacctcacagacaagaagtttaacagtgcactgcagagtggcttttgaacagttcgcttctgaaaatgaagttagtaaaaataaacaggtaatgatatctgcagacttggggtttagctcaatgacagagtgcttgcctagcatgcaagagacccgagttcaatttccagtaccacaaaagtaaataaaataatgtatgcatgctcagattctattgcgtggagatattacctagaaagtcagaattcaaagaatttaaaagatggggtaaaataaaatttgagttttgttcttgatgttctaaaaattgatataggtctcttgagataaatagtacttatggttaagtggaaaaagaaaaacaaaccctgctcttcaggaaaactgagatgggactaaaccaccaagatctgcctgccttgtgctgggattgctcgcatgtgccaccatgtttggactccccttagacacagctagtactacaatgggtcaccactgttgggttttgttgttgctttggttttgttcttgttttactccttattgattaaattcgtcctctgacca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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