2024-09-28 11:19:18, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NR_177923 3580 bp RNA linear ROD 08-AUG-2023 DEFINITION Mus musculus GC-rich sequence DNA binding factor 2 (Gcfc2), transcript variant 2, non-coding RNA. ACCESSION NR_177923 XR_003956216 VERSION NR_177923.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3580) AUTHORS Ma Y, Ren Y and Guan J. TITLE Knockdown of GC binding factor 2 by RNA interference inhibits invasion and migration of vascular smooth muscle cells JOURNAL Mol Med Rep 20 (2), 1781-1789 (2019) PUBMED 31257544 REMARK GeneRIF: The inhibition of vascular smooth muscle cells proliferation and migration by knockdown of GCF2 by RNA interference was mediated by the PI3K/AKT signaling pathway. REFERENCE 2 (bases 1 to 3580) AUTHORS Maga AM, Navarro N, Cunningham ML and Cox TC. TITLE Quantitative trait loci affecting the 3D skull shape and size in mouse and prioritization of candidate genes in-silico JOURNAL Front Physiol 6, 92 (2015) PUBMED 25859222 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 3580) AUTHORS Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S, Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N, Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y, Okado H, Hashimoto M and Asahara H. TITLE A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58 JOURNAL Dev Cell 17 (6), 836-848 (2009) PUBMED 20059953 REFERENCE 4 (bases 1 to 3580) AUTHORS Ballif BA, Villen J, Beausoleil SA, Schwartz D and Gygi SP. TITLE Phosphoproteomic analysis of the developing mouse brain JOURNAL Mol Cell Proteomics 3 (11), 1093-1101 (2004) PUBMED 15345747 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC129024.4. On Sep 1, 2022 this sequence version replaced XR_003956216.2. ##Evidence-Data-START## Transcript exon combination :: SRR13422600.157130.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384, SAMN01164134 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-260 AC129024.4 86410-86669 c 261-389 AC129024.4 84454-84582 c 390-614 AC129024.4 79456-79680 c 615-712 AC129024.4 77437-77534 c 713-788 AC129024.4 76545-76620 c 789-932 AC129024.4 74586-74729 c 933-1048 AC129024.4 74327-74442 c 1049-1235 AC129024.4 70782-70968 c 1236-1359 AC129024.4 68907-69030 c 1360-1441 AC129024.4 67338-67419 c 1442-1554 AC129024.4 66807-66919 c 1555-1754 AC129024.4 65828-66027 c 1755-1905 AC129024.4 63735-63885 c 1906-2024 AC129024.4 61967-62085 c 2025-2101 AC129024.4 60363-60439 c 2102-2168 AC129024.4 58562-58628 c 2169-2315 AC129024.4 56928-57074 c 2316-2440 AC129024.4 53393-53517 c 2441-3580 AC129024.4 51255-52394 c FEATURES Location/Qualifiers source 1..3580 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="6" /map="6 35.81 cM" gene 1..3580 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /note="GC-rich sequence DNA binding factor 2" /db_xref="GeneID:330361" /db_xref="MGI:MGI:2141656" misc_RNA 1..3580 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /product="GC-rich sequence DNA binding factor 2, transcript variant 2" /db_xref="GeneID:330361" /db_xref="MGI:MGI:2141656" exon 1..260 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" misc_feature 29..964 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_177884.4" /note="primary ORF has stop codon >50 nucleotides from the terminal splice site; nonsense-mediated decay (NMD) candidate" exon 261..389 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 390..614 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 615..712 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 713..788 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 789..932 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 933..1048 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1049..1235 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1236..1359 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1360..1441 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1442..1554 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1555..1754 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1755..1905 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1906..2024 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 2025..2101 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 2102..2168 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 2169..2315 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 2316..2440 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 2441..3580 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" ORIGIN
aaggagacgcgccaatcctacttggaacatggctctcaggccccagaggactttcaggcggcgccaggtcgagtccagcgatagcgatagcgatagcgacggcgcgaaggagcagagtgcggaggagccggcgtctgccggcggccgaacagagggagcggagcggccgcgcggggcccgcagcgcccggggccgaggtcgggtctgggcgagttcccgccgcagcccgggagctgctccccgcggggacggcggagcagaatgcagaacagctgagctctcaacggatgaagaggaaggaacacataccttgacaggaagtaagggtgatcggagtccgtcctctgatagctcttgctctctggaagaaagagacgtttcacccatagttgagatccccgatgcagcttttattcaggcagcccgcagaaaacgggagttggccaggaccccaggggactacatttcattggatgtaaaccactcctgctccacttctgactgtaagagaagcaatgaagaggacccagagagcgatcctgatgaccacgaaaagagaatactgtttaccccaaagcctcaaacactccggcaaagaatggctgaagaaacgtcaatcaggagtgaggaatcaagtgaagagagtcaggaagatgaaaaccaagacatctgggagcagcagcagatgaggaaagcagtcaggatcccggcgcatggcacaaacagagccaccttggaagacggaatgtcagcggggaactgcattcatccagttggactctggacaagacagggtctctgtgtgcagccctggctgccctgggactcgtctatagatgagacagacatcacacacacagagaccgtcctgcctctgctgtctgagtgctggaagataaggcatttgccacaatgcctggctggaaaaatagggacaaaatacagacctttcccacagcagtaagtctcaaaccctgaagaagtttgatacttccatttcatttccaccggtaaatttggaaattataaagaaacagttaaataatagattaacattactacaggagtctcatcgctcacaccagagagaatatgaaaaatatgaacaagacatcaagagttcaaagacggctatccagaatcttgagagtgcatcagaccatgctcaaaactacagattctacaggggcatgaaaagttatgtggaaaatataattgattgtctaaatgaaaagattgtcagcattgtggaactagaatcatccatgtacacgttgcttttaaaacggtcagaagcacttttgaaacgcaggcaagatgaattaaaatgcgaatcatcatatttgcagcagttatcacgcaaagatgagacatcggcaaatggaagcttggctgtggatgaaaaggatcaacggattttagaagagattgaagctcggaggatgcagagaagacaggccagggagctctcgggcagctgtgaccatcaggaagggatgtctagtgatgatgagctgtctcctgcagagatgactaacttccacaagtgccaaggtgacattttacaggattgtaagaaagtttttgaagatgtgcatgatgatttttgtaacgtccagaatattttattgaaatttcagcagtggcgagaaaagtttcctgattcctactatgaagccttcgttggtttctgcttaccaaagcttttaagtcccctgatacgagttcagttgcttgactggaatcctcttaagatggactccataggtctagacaagatgccctggttcacagctataacagagtttatggagagcagcatggacgatatagggaaggaagatggttctgataaaaaaatcttggctgctgtcatcaacaaaacagttgttcctcgacttacagattttgtagagaccatttgggatcccctgtcaacctcacagacaagaagtttaacagtgcactgcagagtggcttttgaacagttcgcttctgaaaatgaagttagtaaaaataaacaggatttacttaaatctattgttgcaagaatgaagaagtcaatagaagatgatatttttattcctctatacccaaagagctctgaagaaggaaaaatgtcaccacactccaagttccaagaaagacagttctggggagctctaaagctcttccgaaatattcttctttggaatggccttctcccagatgacaccttgcaagatctgggactggggaagctgctgaatcgctaccttatcatctctcttactaatgccgtccctggaccagatgtggttaaaaagtgcagccagatagcagcatgtctaccagaaagatggtttgagaactctgctatgaggacatcaattccccagctagaaaacttcattaagtttttgttgcagtctgcacagaaattatcctcaagtgaattcaggaatgaagtcagtgaaataattcttatcctggtgaaggtaaaagctctgactcaagccgaatccctcagagaagagcgtcccctggagcccctcccagcccagagtacaggtgtttgagtgcgccgtgtgggagtgcccagagtcaagatgaccgtgtcacagccgatgccgcctttgctgggtgcccacttggggtgtggccaggcctcctgatgcttcgtagctgagggaagtaatgcacagcagcagccgagctcagtgtgctgctcttttactctctcaatccggaaggaaatgaagcaatctgacacacagaagcatgcctgaatcaaaaccatcttcagcaaactccaatgtttgcagatcagctaatgaggaagctctatctctggatggtttcttttatcttattctttggtggggactcggtctcattctgaagtgtaaggaattacttattaaatagctaacacatttttatacaaactgtcctttcaaaatctgtactgacttactgtgtgaaatcagtgcaagagagtgccagtgatctccagattttgattcattgtcaatttgttaaaaaaaaaaaaactttgaaaaaagatttatttttatatgtgtggtcatgtatgtacctgggtgggtttagcactacctccatgtaggggccagagggcatcaggtcccctggaactggaatccaggaggttgtgggccatctaatgtgcttggaaccaaacccaggtcctcagaagagatcttcaccctccctgtgaagaatgaagctgtggtctgagtcatctgtaagtccttaagtgaggcttttttgctatgttttgtgtaactcatggtaggactaaaaaggccattgctcttttaaatacagaaatgtaaagtatttctctaattaaggtagtctgaggcaaggtgattaagaaattatgaacttttctcaaaatgactgtattaatgttcttaagtatatttgttaagcaactcaatgatgatcctgtatttatttttccgtgttgtcactttagacatttgctcgttacaaaagcatgtgtatatgtgtgcagaaagttttgtatataaatggcagagactttatttttgctgttaaagggcacttttggaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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