2024-09-28 11:18:39, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NR_165260 3705 bp RNA linear ROD 22-SEP-2023 DEFINITION Mus musculus nrde-2 necessary for RNA interference, domain containing (Nrde2), transcript variant 4, non-coding RNA. ACCESSION NR_165260 XR_381517 VERSION NR_165260.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3705) AUTHORS Flemr M, Schwaiger M, Hess D, Iesmantavicius V, Ahel J, Tuck AC, Mohn F and Buhler M. TITLE Mouse nuclear RNAi-defective 2 promotes splicing of weak 5' splice sites JOURNAL RNA 29 (8), 1140-1165 (2023) PUBMED 37137667 REMARK GeneRIF: Mouse nuclear RNAi-defective 2 promotes splicing of weak 5' splice sites. REFERENCE 2 (bases 1 to 3705) AUTHORS Sharov AA, Piao Y, Matoba R, Dudekula DB, Qian Y, VanBuren V, Falco G, Martin PR, Stagg CA, Bassey UC, Wang Y, Carter MG, Hamatani T, Aiba K, Akutsu H, Sharova L, Tanaka TS, Kimber WL, Yoshikawa T, Jaradat SA, Pantano S, Nagaraja R, Boheler KR, Taub D, Hodes RJ, Longo DL, Schlessinger D, Keller J, Klotz E, Kelsoe G, Umezawa A, Vescovi AL, Rossant J, Kunath T, Hogan BL, Curci A, D'Urso M, Kelso J, Hide W and Ko MS. TITLE Transcriptome analysis of mouse stem cells and early embryos JOURNAL PLoS Biol 1 (3), E74 (2003) PUBMED 14691545 REFERENCE 3 (bases 1 to 3705) AUTHORS Piao Y, Ko NT, Lim MK and Ko MS. TITLE Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method JOURNAL Genome Res 11 (9), 1553-1558 (2001) PUBMED 11544199 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC166349.4. On Jan 8, 2020 this sequence version replaced XR_381517.4. ##Evidence-Data-START## Transcript exon combination :: SRR17784645.1133360.1, SRR1660817.7521.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164139 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-110 AC166349.4 130627-130736 c 111-234 AC166349.4 122298-122421 c 235-468 AC166349.4 120904-121137 c 469-627 AC166349.4 116957-117115 c 628-1078 AC166349.4 114826-115276 c 1079-1484 AC166349.4 112980-113385 c 1485-1618 AC166349.4 111092-111225 c 1619-1739 AC166349.4 108745-108865 c 1740-1915 AC166349.4 105444-105619 c 1916-2286 AC166349.4 103254-103624 c 2287-3212 AC166349.4 101445-102370 c 3213-3351 AC166349.4 100382-100520 c 3352-3423 AC166349.4 97288-97359 c 3424-3705 AC166349.4 96537-96818 c FEATURES Location/Qualifiers source 1..3705 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="12" /map="12" gene 1..3705 /gene="Nrde2" /gene_synonym="6720454P05Rik" /note="nrde-2 necessary for RNA interference, domain containing" /db_xref="GeneID:217827" /db_xref="MGI:MGI:2670969" misc_RNA 1..3705 /gene="Nrde2" /gene_synonym="6720454P05Rik" /product="nrde-2 necessary for RNA interference, domain containing, transcript variant 4" /db_xref="GeneID:217827" /db_xref="MGI:MGI:2670969" exon 1..110 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" misc_feature 47..2323 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_001290303.1" /note="primary ORF has stop codon >50 nucleotides from the terminal splice site; nonsense-mediated decay (NMD) candidate" exon 111..234 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 235..468 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 469..627 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 628..1078 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 1079..1484 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 1485..1618 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 1619..1739 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 1740..1915 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 1916..2286 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 2287..3212 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 3213..3351 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 3352..3423 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" exon 3424..3705 /gene="Nrde2" /gene_synonym="6720454P05Rik" /inference="alignment:Splign:2.1.0" ORIGIN
agacggcgccatttctgaggcaggagtggtagtgcggcctgtgatcatggcgctgttcccggcttttgcggacgtaagtgaggcctccggtgatggggcattcaggaaagagttagattggctgagcaacccaagctttcgtgttggaaatctaacttctctgagccgacaaactgaagaggtcacagcccttgcttctgaagggtcaccaccgccaaggtactcttttatcaggagtcctctgaagtcagagctctcaggtgagagcaacactagcgagaagctcgcacagacaagcaggaagaagaagaaggagaaaaagaagagacggaagcatcagcaccacaggaaaaccaagaggaggcacgagcagttgagcagcagcggctctgagtcagacacagaggctgggaaggacagggcttcccggagcatcagggacgaccagaaggaagccgagaaaccctgtcagggaagcaatgcggctgctgctgttgctgctgctgctggacatcggtccatttggctggaagatattcacgatctgaccgacgtcttcaggactgataagaagccagatcctgccaactgggagtataaatctctgtatcgtggggatatagcaaggtacaagaggaagggagactcctgcctgggtatcaatcctaagaaacagtgtatatcttgggaaggggcttctgcagcaaagaagcactcacacaggcacctggagcgctattttaccaagaagaatgtggggttaatgagaacagagggcattgctgtgtgcagtaaccccgagcctgcctcctccgagcccgtcacattcatcccagtgaaggactctgctgaggcagctactcctgttacatcatggctgaatcctctggggatttatgatcagtctaccacacagtggttacaaggacagggtccagcagagcaagagtcaaagcagccggactcgcaacaggacagggagaatgctgctctcaaggccagagtggaagagtttaacagaagggttcgggagaatccttgggacacgcaactatggatggcgtttgtggctttccaggacgaggtcatgaggagtcctggcatctatgcccttggggaaggagaacaggagaagcacaggaagtccctgaagctcctcctggagaagaagctggctgtgctggagcgggccatcgagagcaacccaggcagcgtggagctgaagcttgccaagctgcagctgtgctcagagttctgggagcccagtgcgctggccaaggagtggcagaagctcctcttcctgcaccccaacaacacaagcctgtggcagcgctatctctccttttgccagagccagtttggtaccttttctgtgtccaaactccacagtctgtatggcaagtgcttgagtaccttgtctgctgttaaagatggcagcatgctatcccaccctgtgttgccgggcaccgaggaggccatgtttgggctctttcttcagcagtgccactttctacggcaggctggccactcagagaaggtcatctctttgttccaggccatggttgacttcaccttcttcaagcctgacagtgtgaaagagctgcctactaaagtacaggtggaattctttgagcccttctgggacagcggagaaccacgcgttggggagaagggagcccgaggctggcgggcgtggatgcaccaacaggagcgaggtggctgggtgctcatcaccccagatgaggatgacgaggagcccgaagaggaggaccaggagataaaagacaagaccctgccccggtggcagatctggcttgctgttgagcgttctcgagaccagaggcactggcgtccctggcgccctgataagaccaagaagcaaacggaggaagactgtgaggaccctgagagacaggtgctgtttgatgacattgggcaatctttgatcagactttccagcccagaccttcagttccagctcatccaggcctttctgcagttcctgggcgtgccttccggcttcctgcccccagcctcctgcctttacctggccatggacgagagcagcatctttgagagtgaactttatgatgaaaagcccctgacttacttcaacccttccttttcgggcattagctgtgtcggctccatggaacagttgggtcgccctcgctggaccaaaggtcacaaccgagagggcgaggagtttgtccgcaatgtcttccacctggtgctgcctttgctcgcaggcaagcagaagtcccagctcagcctctcctggttacggtcatttggtgtctacacactaaaaagaagcgattgaagtctcagggaaagagctgcaaaaaactagccaagaatctcctcaaggagccagaaaaccgcaacaacttctgcctctggaagcagtatgcacacctggagtggttgctcggtaacacagaggatgccagaaaagtgttcgacacagcactcagcatggcaggcagcagcgagctgaaggaccgtgaactctgcgagctcagtctgctctatgccgagctggagatggaactgtcgccggactcgagaggagccaccacaggccgagcggtccacatattaacacggctgacggagagcagtccctacgggccctacacggggcaggtctcgtccacccaggtgctgaaagctcggaaggcttacgagctcgcgctgcaggactgcctgggccagagctgtgcctccagcccagctcctgcagaggccttggactgcctgggtagcttggtccgatgctttatgctcttccagtatttgactgtgggcattgatgctgctgtgcagatatacggaagggtgtttgccaagctgaagggctctgctcgcttagaagacccagggccagaggacagcaccagctcccagagtttgaccaatgtgctcgaggctgtcagcatgatgcacacaagcctgctgcgattccacatgaacgtttgtgtttaccctctggctccactccgagagaccctctccgatgctttaaagctgtatccgggcaaccaggttctttggagggcttatgtacagattcagaataagtcccacagtgctaacaagaccagaaggttctttgacacagttactaggtctgccaaacatttggagccttggctatttgcaatcgaagctgagaagctgaggaaaaagctagtggaatctgttcagagggtaggaggcagagaggtccatgcaacaatccccgagactggccttacgcatcgcatcagagctttgtttgaaaatgcgattcggagcgacaagggcaaccagtgtcccctactgtggaggatgtatttgaattttttggtttccttaggaaacaaagaaagaagcaaaggcgtgttctacaaggccctccagagctgtccttgggcaaaggtgctatacatggacgccatggagtatttcccagacgagctgcaggagatcctggacgtgatgaccgagaaggagctccgtgtgcgcctgccccttgaggagctggagctgctgctggaggattagtgtgcagccaggcctgggccagcctgcagagcccaaagccgcagctgtgcaggctccactgtcctgctggggttggacgtattgacttacatattatatatgtgatctctatgtacaagtggagtcgtgccagtgataaaccttttgtggttgaca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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