LOCUS       NR_165084               4442 bp    RNA     linear   ROD 05-AUG-2023
DEFINITION  Mus musculus abhydrolase domain containing 18 (Abhd18), transcript
            variant 5, non-coding RNA.
ACCESSION   NR_165084 XM_006500781
VERSION     NR_165084.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 4442)
  AUTHORS   Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen
            A, Canidio E, Pagani M, Peluso I, Lin-Marq N, Koch M, Bilio M,
            Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E,
            Mehmeti S, Dagand E, Schrinner S, Nurnberger A, Schmidt K, Metz K,
            Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe
            F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S,
            Helbig C, Alunni V, Battaini MA, Mura C, Henrichsen CN,
            Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S,
            Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple
            CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P,
            Reymond A, Davidson DR, Dolle P, Antonarakis SE, Yaspo ML, Martinez
            S, Baldock RA, Eichele G and Ballabio A.
  TITLE     A high-resolution anatomical atlas of the transcriptome in the
            mouse embryo
  JOURNAL   PLoS Biol 9 (1), e1000582 (2011)
   PUBMED   21267068
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC160757.3 and BC051081.2.
            
            On Dec 13, 2019 this sequence version replaced XM_006500781.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC051081.2, SRR9219381.246892.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849383, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                AC160757.3         50320-50385         c
            67-3191             BC051081.2         1-3125
            3192-4442           AC160757.3         6506-7756           c
FEATURES             Location/Qualifiers
     source          1..4442
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="3"
                     /map="3 19.58 cM"
     gene            1..4442
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /note="abhydrolase domain containing 18"
                     /db_xref="GeneID:269423"
                     /db_xref="MGI:MGI:1915468"
     misc_RNA        1..4442
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /product="abhydrolase domain containing 18, transcript
                     variant 5"
                     /db_xref="GeneID:269423"
                     /db_xref="MGI:MGI:1915468"
     exon            1..185
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            186..293
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            294..378
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            379..479
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            480..558
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            559..754
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    583..657
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="COORDINATES:
                     alignment:Blast2seq::RefSeq|NM_001377111.1"
                     /note="primary ORF has stop codon >50 nucleotides from the
                     terminal splice site; nonsense-mediated decay (NMD)
                     candidate"
     exon            755..772
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            773..911
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            912..1001
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1002..1103
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1482
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1483..1645
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1646..4442
                     /gene="Abhd18"
                     /gene_synonym="2310068E01Rik; 3110057O12Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acgccccgccccgaggacgtcctccctgtcaggctggctggcagctcgcctgctgttttgtacctgagcagattcagctctctgctgtccgagctgaggcgaaagtccggtgccttaagcgtggagagcggtggtggccagaggcttggcgagttccccttcaggtgtgcctcggcgagcggcctatgctgtttggcactcatgggtgtaagcaagttagatattctataccggagacttcttctcacaaaacttttcatcagaggatggggaaggccagaagacctcaagagactctttgaattcagaaagatgattggaaatcgagaaaggtgccagaacctggtttcaagtgactacccggtacacatcgataaggttgaagaacagtcagattgtaagatcctagatggacactttgtttctcccatggcccactatgtgcctggtatcatgccaattgaatctgttgttgcaagattccagtttatcgtgcctaaggaatggaacagcaggtaccgacctgtgtgcattcatctggctggaacaggagaccatcattactggaggcgcagaacactcatggctcgtcctatgattaaggaggccaggatggcttcattgttgttagaaaacccttattatatccttttgtgatactcaaaacatttctttctctctgtttatgtacttactcttcaaaagaagaacatcctgtgctctcaaccactgagccatctctccagcccccatggaagcccaaggaccaagtaagatccagcttaaaaaatgtgtcagacctatttgtgatgggaggcgctcttattcttgagtctgcagctctcttgcactggctggagagggaaggttatggacctcttgggatgactggaatatccatgggaggacatatggcctccttagcagtgtccaactggcccaagcccatgccgttgattccatgcctgtcttggtccacagcatctggggtcttcactacgggtgtattgagtaaatcaattaattggcgggagctcgaaaagcagtattatacacagacagtttatgaagaagaaattattcatatgcttgaatactgtgggacagattctttcaaaatgggacacgagttcatgaatcacttgcctagcaatgcagacaagctgactaacctgaatctggtttccagaactttaaatttagatatgacagaccaagttgtatccccaaaggatgccaagtgccataagtctggtaaaacatctatcagtgctccttcaaatggacagctgttgcaagatacagctaagatggaatgcttgaatcaaacgctctcgactaacaaaagttggtttgcaagttacaaccctcagtcatttcacctgctcaatagagaacaaagaagaagcaatcgtcaaaaagaatctttaatattcatgaaaggagtcatggatgaatgtactcacgtagcaaacttctcagttccagttgatccaagcctcattatagtggtacaagccaaagaggatgcctatattccacgaacaggagttcgaagcttgcaagaaatttggcctggttgtgaaatccggtatctagaagggggtcatatcagtgcttatctctttaaacaaggactcttcagacaagccatctacgatgcctttgaacgtttccttcataaatatgctaactaattggattgatgtattgtataacatcctatttcctacaaaaagagtttacccaatgatgatgtgaaaaacaagcaaacagcactacatacttgattgttgccaaattagtctgtgttgccagtgttacgggtcagttacaaactgtggatacatttcagtaatgaaaaaactacttgaaaaatacaatcctgaagtatttgtaactctttaaaaaatctcatataccttatacaacatctgttgttactatttatgaaaacattttaattgtgaataatttattgattcagaataaatagaaactattggttttttaatagaattgttgaaactaaaattgtaacatcacatgtactgtatattgttctatggcagttttgctattaacttgattttaaaaactcgtgtctatcctttttgtgtgtgtagtgggtttataatttggttttcaactttaggtgatttattgccatagaaatacctaagatataaaatcagtgttagctttgaattatgaaaacatcctgagtgctgagctgcaccctctgtggtagtgcacttgtagtcccagcacttgggaagtggagacaggagtgtcaggagtccagccattctgtttttcatagcaaaatttgaggccagcctgagctgtatgagaccctgtctcaaacaattgcctggcatggtagctcatgactttaatcttagcgggtaggagacagagccaagcagatctcttgaagtgccaaggctgggaccatgcttgcccagcctacctagactctgaggccagtccccagcactgccaaatgaaaagaaaagctggaggtatttgggaaatgggggttatacatgttttctctacttaagagagttttatgtcgaaaatggaaataataaaagaacattgtactagatggtgggttctgtcagacatttcttatacacctgttcttcagttgcttacagactgagttaacaactttgaccttttaatttcagaatttaaaagctacatattaaattaaaccattgtacagaaaaacacgaggttttacacactgctagctttttaaatggaaattatatggatagatatttggtgctaatgttaaactgctctgagctaaaatgtttaaaaggcaaatgtgtttactttgaaatctgtattgcccttaaatttaaattaggtcttgcaggtctagtgaggatatgtggattgtaacataccttctgcagctttttaaaaagatgctatcgcactccaatgtctttgccactaaaatttctaccagctatttaaacatctttactgtgaaatcattgatagcaaagaagtagcttcttggacattactttttaaggtttattaattttatgtatataagtacactgtcactgtcatcagacatatcggaagagggcatcagatcctattacagatggttgtgatctaccatgtgggtgctgggaactgaactcaggacctctggaagagcagtcagtgctcttgaccactgagctatctctcagccccttggacactattttcaagtaacattacagtagagctgttagagctacagcaattttgtactttcaggcttgaatacaaatacaagaaaacctggtcatggttgtggtggtgcatgcctttaattccagcaaagtcaggtactctctgagttggaggccagcctctgggctacacagagaaaccctgtcttgaaaacaaaacaaaaccacaaaacaaacaaaaaagcaaaagaactgggtgtaggaccatgagtggtggcaccctcttcctcctgcactgggaggcagagttcagggtcagccttgtcttcagaggagttccaggacaaccagggctacactgggtattactggaggtacatccctgaaattcctgcacttgggaggcagagcatcagtcaaccacaaggttcaggccagaatagtctacataatatattccagatcaactagggctacctgtcacatataagtttattttcatcttttaagtggctgtttcaagacagcattcgcaaaactacctaaacttattaattcagagaagaaaatgcctttactcacatttcttcaaatccactctgcaaaatagtagcttaagtactataaagtctcaaacccttgggacaaatggctgaaatgcttatctaacatatcaaattgaatctggccacaaggttctcccgccatccctacttggtttccacaccccgcctcctatattgaactctctgaactttgctgcccccaacatacacacacacacacacatacacacacacacacacacacacacacacacacacacacaagttgtatatagtctttgagaaattaatgtattctcaaagaagtcctctatgccattttcctgtcactttgtggattaggtctatgaaatactacagattcattcagagcagagttgcaaggagctcaccatgggccagtttgacccaattttatttggtgtacataagagtgggcattcttatatgtagctactactctatatttacgactcagccctaaagaccctgaagaagtagttctgtagttagacttcataatttaccaatgttgtaagtatatcattttatcaatgtattttaatgtggtgctttctctattaaaatattaacaatataacaatttttaaaatatttgccaaattttatatttcctaataaaaatctattttagaaagta

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