2024-06-15 15:13:54, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NR_153797 3521 bp RNA linear ROD 02-MAY-2024 DEFINITION Mus musculus RAS protein activator like 3 (Rasal3), transcript variant 3, non-coding RNA. ACCESSION NR_153797 XR_001782081 VERSION NR_153797.2 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3521) AUTHORS Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A., Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R., Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J., Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z., Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J., Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L., Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J., Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B., Jackson,S.P. and Balmus,G. CONSRTM Sanger Mouse Genetics Project TITLE Genetic determinants of micronucleus formation in vivo JOURNAL Nature 627 (8002), 130-136 (2024) PUBMED 38355793 REFERENCE 2 (bases 1 to 3521) AUTHORS Olivier,J.F., Langlais,D., Jeyakumar,T., Polyak,M.J., Galarneau,L., Cayrol,R., Jiang,H., Molloy,K.R., Xu,G., Suzuki,H., LaCava,J., Gros,P. and Fodil,N. TITLE CCDC88B interacts with RASAL3 and ARHGEF2 and regulates dendritic cell function in neuroinflammation and colitis JOURNAL Commun Biol 7 (1), 77 (2024) PUBMED 38200184 REMARK GeneRIF: CCDC88B interacts with RASAL3 and ARHGEF2 and regulates dendritic cell function in neuroinflammation and colitis. Publication Status: Online-Only REFERENCE 3 (bases 1 to 3521) AUTHORS Saito,S., Cao,D.Y., Victor,A.R., Peng,Z., Wu,H.Y. and Okwan-Duodu,D. TITLE RASAL3 Is a Putative RasGAP Modulating Inflammatory Response by Neutrophils JOURNAL Front Immunol 12, 744300 (2021) PUBMED 34777356 REMARK GeneRIF: RASAL3 Is a Putative RasGAP Modulating Inflammatory Response by Neutrophils. Publication Status: Online-Only REFERENCE 4 (bases 1 to 3521) AUTHORS Muro,R., Nitta,T., Kitajima,M., Okada,T. and Suzuki,H. TITLE Rasal3-mediated T cell survival is essential for inflammatory responses JOURNAL Biochem Biophys Res Commun 496 (1), 25-30 (2018) PUBMED 29291408 REMARK GeneRIF: Collectively, Rasal3 controls the magnitude of inflammatory responses through the survival of both naive T cells and activated T cells in vivo. REFERENCE 5 (bases 1 to 3521) AUTHORS Saito,S., Kawamura,T., Higuchi,M., Kobayashi,T., Yoshita-Takahashi,M., Yamazaki,M., Abe,M., Sakimura,K., Kanda,Y., Kawamura,H., Jiang,S., Naito,M., Yoshizaki,T., Takahashi,M. and Fujii,M. TITLE RASAL3, a novel hematopoietic RasGAP protein, regulates the number and functions of NKT cells JOURNAL Eur J Immunol 45 (5), 1512-1523 (2015) PUBMED 25652366 REMARK GeneRIF: results suggest that RASAL3 plays an important role in the expansion and functions of NKT cells in the liver by negatively regulating Ras/Erk signaling REFERENCE 6 (bases 1 to 3521) AUTHORS Muro,R., Nitta,T., Okada,T., Ideta,H., Tsubata,T. and Suzuki,H. TITLE The Ras GTPase-activating protein Rasal3 supports survival of naive T cells JOURNAL PLoS One 10 (3), e0119898 (2015) PUBMED 25793935 REMARK GeneRIF: Rasal3 is required for in vivo survival of peripheral naive T cells, contributing to the maintenance of optimal T cell numbers. Publication Status: Online-Only REFERENCE 7 (bases 1 to 3521) AUTHORS Yu,X., Bauer,K., Koczan,D., Thiesen,H.J. and Ibrahim,S.M. TITLE Combining global genome and transcriptome approaches to identify the candidate genes of small-effect quantitative trait loci in collagen-induced arthritis JOURNAL Arthritis Res Ther 9 (1), R3 (2007) PUBMED 17244351 REFERENCE 8 (bases 1 to 3521) AUTHORS Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S., Saga,Y., Kitamura,H., Nakagawa,T., Nagase,T., Ohara,O. and Koga,H. TITLE Prediction of the coding sequences of mouse homologues of FLJ genes: the complete nucleotide sequences of 110 mouse FLJ-homologous cDnas identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries JOURNAL DNA Res 11 (2), 127-135 (2004) PUBMED 15449545 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CT485616.11. On Jan 21, 2022 this sequence version replaced NR_153797.1. ##Evidence-Data-START## Transcript exon combination :: SRR1660811.102950.1, SRR13422600.1778402.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-61 CT485616.11 25793-25853 c 62-405 CT485616.11 25328-25671 c 406-545 CT485616.11 21562-21701 c 546-624 CT485616.11 21357-21435 c 625-686 CT485616.11 21189-21250 c 687-757 CT485616.11 20293-20363 c 758-884 CT485616.11 19766-19892 c 885-983 CT485616.11 19582-19680 c 984-1520 CT485616.11 18620-19156 c 1521-1665 CT485616.11 18094-18238 c 1666-1773 CT485616.11 17384-17491 c 1774-2010 CT485616.11 16310-16546 c 2011-2212 CT485616.11 16013-16214 c 2213-2331 CT485616.11 15795-15913 c 2332-2722 CT485616.11 14670-15060 c 2723-2880 CT485616.11 14318-14475 c 2881-2944 CT485616.11 13608-13671 c 2945-3521 CT485616.11 12931-13507 c FEATURES Location/Qualifiers source 1..3521 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="17" /map="17 17.55 cM" gene 1..3521 /gene="Rasal3" /gene_synonym="A430107D22Rik" /note="RAS protein activator like 3" /db_xref="GeneID:320484" /db_xref="MGI:MGI:2444128" misc_RNA 1..3521 /gene="Rasal3" /gene_synonym="A430107D22Rik" /product="RAS protein activator like 3, transcript variant 3" /db_xref="GeneID:320484" /db_xref="MGI:MGI:2444128" exon 1..61 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 62..405 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" misc_feature 78..1883 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_001347343.2" /note="primary ORF has stop codon >50 nucleotides from the terminal splice site; nonsense-mediated decay (NMD) candidate" exon 406..545 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 546..624 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 625..686 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 687..757 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 758..884 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 885..983 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 984..1520 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 1521..1665 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 1666..1773 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 1774..2010 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2011..2212 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2213..2331 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2332..2722 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2723..2880 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2881..2944 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" exon 2945..3521 /gene="Rasal3" /gene_synonym="A430107D22Rik" /inference="alignment:Splign:2.1.0" ORIGIN
gaggaaggaagctaggcacagtacagacggctgctggttctggactggccaggaaatcaagcagagactcctccgccatggacccaccgttgcagagtgaagaagattcccaaacgcagccctcgctgccctctccgctgacatcctaccgctggcacactggaggcagtggggaaaaggctgctggagggttccgctggggccgctttgcaggctggggaagggccctgagccatcaggagcccatggtgaacagccagccagcccccagatctctgtttcgtcgggtcctctctgcaccccctaaggagtcacggtccaatcgcctccggttttccaagaccctgtggggaaggcacaagaacgtggcaccactggaacccaagccaaatccgaaggccccagagccagagctggagttggtagcagacccagatctacccgttgcacagatccctgagcctcccaccccggacatgcctgtttggaacattgatggctttacccttctcgaaggaaagctggtgatgctcggtgaggaggagggtcctcgccaaatccgagtgggaagcgccagttcagagaacagcatgcaggcagctttggggaacctcaaggatgcagttcggacccctggaaaaactgagccggaagctgctggttccaaccaggtccacaatgttcggaagttactcaagaggctgaaggagaagaaaagagccaagtcagaactgggagcctacacccctcgagatggacctcccagtgccctcggttccagagaatcgctggccacactctctgagctggacctaggtgctgagagggacgtgagagtctggccactgcatcctagcctcttgggggagccctactgcttccaggtaacctgggcaggtgggagcctctgtttctcatgtcgctcgagcgctgagagagaccgttggattgaggaccttcgtcggcagttccagccgagccaggacaacgtggagcggcaagagatgtggctgacggtgtgggtgcacgaggccaaagggctaccccgagcaactgtacccggagtgcgtgcggagctgtggttggatggcgcgctattggcgcgcactgccccccgtgccggcccaggccaactcttctgggctgaacgcttccacttcgaggcgttgccacctgcccgtcgcctgtcgctgcggttgcgcagcgcaggcccggcaggggcaaccgtgggcagggtggtgctggagctggacgaggtgagcatcccccgcgcgcctgccgcgggcctagagcgctggttcccggtgcttggggcgccggcaggtgcggtgctacgagcgcggatcagggtgcgttgtctgcgcgtgctgccgtcggagcgctataaggagctggccgagttcctcaccttccactacgcgcgcctgtgcggggcgctggagccggcgctgtctgctcaggccaaagaggagctggcagcagccatggtgcgcgtgctacgagccactggccgagcgcaggcattggtgacagacctaggaaccgcagagctggcacgctgtggaggccgtgaagcactgctattccgagaaaataccttagccacaaaggccattgatgaatacatgaaactggtggcacaggagtacctccaggacaccctggggcaggttgtgcggtgtctctgtgcctccactgaggactgtgaagtggaccccagcaagtgcccaacaccagagctgccaaaacaccaagctagactgcgagacagctctgtttcccagcagagctgggctccgtgttctcaagttggcgtgaagcatgcaaagcacgaggctctgaggccctgggcccccggctggtgtgtgcttccctcttcctgaggcttttatgccctgccatcttggcacctagcctctttggcctggcaccagagcacccagccccaggcccagccagaactcttacactcatcgccaaggtcatccagaacctcgccaactgtgccccgtttggtgagaaggaagcctacatggcgtttatgaatagcttcctggaagatcatggaccagccatgcaacacttcctggaccaggtagctacggtggatgcagataccacacccagtggctaccagggaagtggagacctggcccttcagttagcagttcttcatgtccagctctgcacaatctttgccgaacttgaccagaaaacccaagatagcttggaaccactacccaccatccttcgagccattgaggaaggccggcctgtcccagtgtctgtaccaatgcgtcttccccggatctccactcaggtccaatccagcttcttttcaggggagaaacccggcttcctggcaccccgagacctccccaagcacactcccctcatttccaagagtcaatctctgcgcagctttcaaggggcaggaagctgggccagtcggcggccagatgaggagcggccccagaggcggccgcggccagtgctgcgcacacagagcgtccctgccagacgtcctacccaccgtcgcccttctgcaggttccaagccgcggcccaaaggctccctacgcatgggccccgcgccttgcggacgggcctggactagggcttctgcctcgctacctcggaagccatcggtaccatggcagcgccaaatggaccagccgggggaccgataccaaactacgggaacgcaccgaccagtgggcaagctagcagagatacaatgtgaggtggctatattccgcgaggcacagaaagctctgtcccttctggtggagtcgttgagtacccaagtccaagccttgaaggagcagcaggagcacttccgctgtcagctgcaggatctgtactccagactgggagctggtatctcaaagttggattctaagggtggtctcccaagcaacggaagccacaggctgaaaagtctggaacagcgcctgactgagatggaatgttctcaggaccagctgagggatagcctccaaagcctgcaacttctttcaaaaacaccaggatctcggagccagcccctgcctctcaaagcaccatgtgtcaatggagctgatctgtcaatgggcacttgagcatttcaccccactccatatatggtctggaagccaagagagccactacagaggattttctgactgcctcagcccttcatggccttcagtgggggacagagtgggaggtgtcaatcactctggtaactgtgaggttgcccagtaaatccatttcagaaaatcaccggtttctctgcccctacaaatgattaatacaagagaatgcccagttctccattcaggtctcccaaattcatacctaatttgaagtctcctgaagttggaaataatgagcagatcctcacaattggtgtgatctaaggttgtcactttaagagactccattctctcctctgtaaagtgtatctaaaaattctccacatagtggaaaactcttagttaaaggtattcaataaagggtattgatcatttttggggggaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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