2024-09-28 11:19:19, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NR_110571 1223 bp RNA linear ROD 05-AUG-2023 DEFINITION Mus musculus zinc finger E-box binding homeobox 2, opposite strand (Zeb2os), transcript variant 2, long non-coding RNA. ACCESSION NR_110571 NM_001177395 XM_001472634 VERSION NR_110571.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1223) AUTHORS Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM, Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming LG. TITLE The Vertebrate Genome Annotation browser 10 years on JOURNAL Nucleic Acids Res 42 (Database issue), D771-D779 (2014) PUBMED 24316575 REFERENCE 2 (bases 1 to 1223) AUTHORS Beltran M, Puig I, Pena C, Garcia JM, Alvarez AB, Pena R, Bonilla F and de Herreros AG. TITLE A natural antisense transcript regulates Zeb2/Sip1 gene expression during Snail1-induced epithelial-mesenchymal transition JOURNAL Genes Dev 22 (6), 756-769 (2008) PUBMED 18347095 REFERENCE 3 (bases 1 to 1223) AUTHORS Nelles L, Van de Putte T, van Grunsven L, Huylebroeck D and Verschueren K. TITLE Organization of the mouse Zfhx1b gene encoding the two-handed zinc finger repressor Smad-interacting protein-1 JOURNAL Genomics 82 (4), 460-469 (2003) PUBMED 13679026 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC065800.1 and AL935127.9. On Feb 20, 2014 this sequence version replaced NM_001177395.1. Transcript Variant: This variant (2) lacks an exon and contains an alternate 5' terminal exon, resulting in a shorter transcript, compared to variant 1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC065800.1, AA423542.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849381, SAMN00849382 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-755 BC065800.1 1-755 756-1223 AL935127.9 26802-27269 FEATURES Location/Qualifiers source 1..1223 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="2" /map="2 27.31 cM" gene 1..1223 /gene="Zeb2os" /gene_synonym="Gm13476; Zeb2nat" /note="zinc finger E-box binding homeobox 2, opposite strand" /db_xref="GeneID:433424" /db_xref="MGI:MGI:3652108" ncRNA 1..1223 /ncRNA_class="lncRNA" /gene="Zeb2os" /gene_synonym="Gm13476; Zeb2nat" /product="zinc finger E-box binding homeobox 2, opposite strand, transcript variant 2" /db_xref="GeneID:433424" /db_xref="MGI:MGI:3652108" exon 1..83 /gene="Zeb2os" /gene_synonym="Gm13476; Zeb2nat" /inference="alignment:Splign:2.1.0" exon 84..234 /gene="Zeb2os" /gene_synonym="Gm13476; Zeb2nat" /inference="alignment:Splign:2.1.0" exon 235..1223 /gene="Zeb2os" /gene_synonym="Gm13476; Zeb2nat" /inference="alignment:Splign:2.1.0" ORIGIN
ttctgcttagaaaacagccttctccggtgggaaaggttagactagtctgccagatctaagagaaggacttgctcccgaatttgttttggccagaaatggtgagaagaaaaagcatgaagaagccgcgaagtgtgggggagaaaaaggtggaggcgaagaaacagctcccggagcaaactgaacaaaacctcgccaagagtgtctggaggcaggaccgttattcctgccgagcaggggagagaagagagaccctgaaacacgcgccacctatctttgtggggagggataattgaagcgccctgagcgtgagcatcatgtgaaaacgtgatcgccaagtttctctctgggaaaggatctgggatagattataccttgaagtctccgcaaacgctttagtggaagaaatgaaattccacctccctcccttcctctctccctccctcccttctccacgccccccccccccccccccccccccgtcaagcaagcctttggcatcattatcctcatcactaaatcctgcagagtactgggcggaaaacggtgcacaccattcacagaactggagaactccaaggggcgaaagttaaagggaaagctctcgggtcttccatgcagatctcttgtcttatacagatatctctggtgactaggtttgaggtgcacgtcaagttgtatggatacctcaagcaccgtttttggaactaaattcttgccctttctcttattacatttttttttttaaagatgccagagctaggggagggaaatgctacttgtacactgcatcttaggatctcagtgtgcagtgtatgtgtgtatgtgtgtgtgtgtgtgggggggagattttctggattggatccctatattaaaagtttggcattttaataaagggtctctaggttaacatagagctgtactatgctggccaatctctggacccctctacacctcatgcagaccacattacaaagtgaggggacaggggcaggaggaagaaggagaaaggtcagaggaacttaggacgaaagaaagaagagggtgacactaaactgtgtggggtctaagttttgaagtgcatatttttgatattgcaattaaactaaaattaaaaagaaaagactccacctttgctctgaagggattggttatgcaaatatggaagggatttcctggagaatacagctttctactgtatggttaattaaataatcactcaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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