LOCUS       NR_075094               1863 bp    RNA     linear   ROD 05-AUG-2023
DEFINITION  Mus musculus ventral anterior homeobox 2, opposite strand (Vax2os),
            transcript variant 1, long non-coding RNA.
ACCESSION   NR_075094
VERSION     NR_075094.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1863)
  AUTHORS   Lo Giudice Q, Leleu M, La Manno G and Fabre PJ.
  TITLE     Single-cell transcriptional logic of cell-fate specification and
            axon guidance in early-born retinal neurons
  JOURNAL   Development 146 (17) (2019)
   PUBMED   31399471
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1863)
  AUTHORS   Meola N, Pizzo M, Alfano G, Surace EM and Banfi S.
  TITLE     The long noncoding RNA Vax2os1 controls the cell cycle progression
            of photoreceptor progenitors in the mouse retina
  JOURNAL   RNA 18 (1), 111-123 (2012)
   PUBMED   22128341
  REMARK    GeneRIF: Vax2os1 is proposed to be the first example of lncRNA that
            acts as a cell cycle regulator in the mammalian retina during
            development.
REFERENCE   3  (bases 1 to 1863)
  AUTHORS   Alfano G, Vitiello C, Caccioppoli C, Caramico T, Carola A, Szego
            MJ, McInnes RR, Auricchio A and Banfi S.
  TITLE     Natural antisense transcripts associated with genes involved in eye
            development
  JOURNAL   Hum Mol Genet 14 (7), 913-923 (2005)
   PUBMED   15703187
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC090647.6.
            
            On Feb 17, 2018 this sequence version replaced NR_075094.1.
            
            Sequence Note: The RefSeq transcript was derived from the reference
            genome assembly. The genomic coordinates were determined from
            alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK044313.1, SRR17784644.32293.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384, SAMN01164137
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                AC090647.6         86049-86140
            93-1689             AC090647.6         92854-94450
            1690-1863           AC090647.6         94575-94748
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 35.94 cM"
     gene            1..1863
                     /gene="Vax2os"
                     /gene_synonym="Vas2os; Vax2os1; Vax2os2"
                     /note="ventral anterior homeobox 2, opposite strand"
                     /db_xref="GeneID:574519"
                     /db_xref="MGI:MGI:3583301"
     ncRNA           1..1863
                     /ncRNA_class="lncRNA"
                     /gene="Vax2os"
                     /gene_synonym="Vas2os; Vax2os1; Vax2os2"
                     /product="ventral anterior homeobox 2, opposite strand,
                     transcript variant 1"
                     /db_xref="GeneID:574519"
                     /db_xref="MGI:MGI:3583301"
     exon            1..92
                     /gene="Vax2os"
                     /gene_synonym="Vas2os; Vax2os1; Vax2os2"
                     /inference="alignment:Splign:2.1.0"
     exon            93..1689
                     /gene="Vax2os"
                     /gene_synonym="Vas2os; Vax2os1; Vax2os2"
                     /inference="alignment:Splign:2.1.0"
     exon            1690..1863
                     /gene="Vax2os"
                     /gene_synonym="Vas2os; Vax2os1; Vax2os2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggaaatgcacctagctttcagtctggctccgcttgatggaaaactcagagctcgaggaggcgaccctgactcgacccggcagaaaagaggagacggaaaactccctccctagaatctggaatgaactccttgtgtctgcggttcttccagcctctctggctttggcaggacactagattctggcttacccttccccggctctcggctctcgtccctggccagccactgtgaccactgctttgccagaccaccagtgtgtcagattcgtttccgttccggaagattggtatttgtatggttattgttttgaaaaaaagaaaacgaattaaattaaggggaaccaaggagagggatatttgtagctgaggccattgcttcagtgtggagccctggttgtgcccttcagagcctcgggccgagagggagtgtgggggctgtggggcccccgggaattagcgcgtggagtgaacgtcggggcaagagttggggtggattagcgggttcaaaagcaggtcagggggagctaagcgtggcgaccaagtccgtgctaggtcaaggtccctggcaaaggctggctcgagcgatctgcaggaagccgtaccagtctgcagctgcccagccagggaccagagaaatgcaacaggaacccatgcttgtctgcaataatttacaggaccccgttcgagctccctggttgaggtgtgctcaccttgaaagacagggtttctcttttacattttaaccttttctttcttttcttctttatgtttgagacaggacctcactccgtagcccaggttggcctccagctcagggccatcctcctgtggaacccctgagatcacaggcgtgtctcaccaagtcccacctctttgtttttatactccctcctttctgaccagataaatacatcgacccacgcaggtagaattttcttctcaagagtctctttctcctcctgacatcgggggccatgtgagtcaaatgggggttggggatttctgagacacaataaaagaatcgcatcctcctcttcccgctcgagtacctgcgatagggagggagagctgggagtagctgagtcgctctttcctttgcgaaagggagagaggtgactctgagccccgaacgtttgtagggccctggatagtcttcccttttctccaaaagactcgtgagttttaacagggaacaaacttggagacgcggtggatttcgaaatcccggtcttgttggtggcctaagaacaatttacaaagcagccggggtggggatgaatcctcgaggtctaccgagggtggtggcccctcccgagtcgcttgggacctggcgtggggcttcttttcctcccgcgctgtgcaggcccagggagtggggtacgcggatggacttggttttgttgaaatccggtgaatctggactcgggtcgggctagcttcacggagtaagcctatccgatccctgcaggggagaagtttcctacttccagctctggggaaagtacggaaggtggcaaggagctgtggaaagcggaggtggcttgggagaggcctgggctgtggagtccccgggcggctcccgcgacttctctggaatgcttccgagctgcaggccctggatgctggcgtgcagggtgtagagcggcagacccggatggaccggctggtgcggtgctcgggtccgagtggagcgggcgttctcgcttcgcggcttgcaaccggcctcacagttcaggcttcagcggcagaaataatgggactgacggcaagaaagtatcccaacgctttcccgctcttctggagctgcctccaccccatccccaccgccgcatccttctttttgaataaatttaccttgaaagta

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