2024-09-28 11:19:02, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NR_040279 1663 bp RNA linear ROD 04-AUG-2023 DEFINITION Mus musculus distal-less homeobox 4, opposite strand (Dlx4os), long non-coding RNA. ACCESSION NR_040279 XR_106396 XR_106589 VERSION NR_040279.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1663) AUTHORS Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM, Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming LG. TITLE The Vertebrate Genome Annotation browser 10 years on JOURNAL Nucleic Acids Res 42 (Database issue), D771-D779 (2014) PUBMED 24316575 REFERENCE 2 (bases 1 to 1663) AUTHORS Dinger ME, Amaral PP, Mercer TR, Pang KC, Bruce SJ, Gardiner BB, Askarian-Amiri ME, Ru K, Solda G, Simons C, Sunkin SM, Crowe ML, Grimmond SM, Perkins AC and Mattick JS. TITLE Long noncoding RNAs in mouse embryonic stem cell pluripotency and differentiation JOURNAL Genome Res 18 (9), 1433-1445 (2008) PUBMED 18562676 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK080562.1 and AK139229.1. On or before Jul 7, 2011 this sequence version replaced XR_106589.1, XR_106396.1. ##Evidence-Data-START## Transcript exon combination :: AK139229.1, AK080562.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164132, SAMN01164134 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-653 AK080562.1 2-654 654-1663 AK139229.1 608-1617 FEATURES Location/Qualifiers source 1..1663 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="11" /map="11 59.01 cM" gene 1..1663 /gene="Dlx4os" /gene_synonym="A730090H04Rik; Dlx4as" /note="distal-less homeobox 4, opposite strand" /db_xref="GeneID:320453" /db_xref="MGI:MGI:2444057" ncRNA 1..1663 /ncRNA_class="lncRNA" /gene="Dlx4os" /gene_synonym="A730090H04Rik; Dlx4as" /product="distal-less homeobox 4, opposite strand" /db_xref="GeneID:320453" /db_xref="MGI:MGI:2444057" exon 1..222 /gene="Dlx4os" /gene_synonym="A730090H04Rik; Dlx4as" /inference="alignment:Splign:2.1.0" exon 223..377 /gene="Dlx4os" /gene_synonym="A730090H04Rik; Dlx4as" /inference="alignment:Splign:2.1.0" exon 378..1663 /gene="Dlx4os" /gene_synonym="A730090H04Rik; Dlx4as" /inference="alignment:Splign:2.1.0" ORIGIN
gccctccccctaccgcagattcctgggtatcggagagagaagcgtttgaatccctctagttgcgcgcaagcagaagaacgcgaaatttatgcaaagacaacccagaccccagaggtgaggagagccgccgcggtcacacttacctgcttcgagctcctgcgggtgttcagccggcctgtgaaagggctgagatggcgccaccaattgttgctggcggggcagcaaggctatcagcttggatcctggcctttcccccagtgcagccaggtggagctcaccagcctggagacccggtcagtctaaattctaatcctgcctccaccctgcagtgacttggacaagtaaaacttcactcgtgtctcagtttcttcatctggtatcaggaaaacagccaagaagcaaccaggaagcagatggactcaacataggaaaccaacagaccctcatggaggtccagggaacttccttgcctttgctctgtccccacccccaggcctgggattgagatggagactctcctggttcctggaggaccttggcgtctttagtctgtaaaggtggcaggaatccccagacaatccagtccaccctagaagccctgcctctgcacagcgtgactctggaaagttctgactcggtcaccacctgctctaaccacaaaccctgaactggcccaagcctccaaaccagcaagatgacgtggctcagcctggaaggtggtggtggcctctgagtgccaggcacccagcagggcagggaggagcacttggcagcctgtggacaagccctcagcctccaccctgtggggctgctcagttaccatggtccctctgtgtgtgagtgtgtgtgtgcgccagaggtcagcatcaggtgtctttctcaattcctgccctgtcctgaacctggagcttcacaattcagctcagctgatggccaggaagccacaggatcctcccgtctccagctcgtgctggaattgcaggcatgtgtgctgcgtccagcttcttccgtggtgctcaggatccaaagctaggtcctcatgcgtgcatgtctaggccccaagtccctcagctgccatgagccttagaactagaagacatctgaagtcccacaaaccagtgggttttgaattctggaaccaggagaaatgggattggtagtttgcatattagtaaacaccttggtgggaaaacctttcagcccagtgcccccccaagagacacatgaagaagggaacacaggaggggacaagactggcatgtgttgacatagtaaatcagatgaaaacccagatgtttagactctgggacagggtgtctttatgtcagctatcttttttgagacaaagtttctcagagtttctatagccctggctgttcctgaactagctctgtagatcaagctgggctggaactcagagatctgcctgcttctggcctcgcaaatgctgggattaaaagcatgtgccgccaccacccagatttttgtttgtttatattttgtcccatctctgacccccatccctggtgccctgtccccaagacaaagtcttactgtgtaactctgactgtccttgaacttactctgcatgccaggctggcctcaaaatcacagagatccacctgcctctgccttccaagttctgagattaaaggcctgtgcc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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