LOCUS       NR_038085               1305 bp    RNA     linear   ROD 04-AUG-2023
DEFINITION  Mus musculus SIX homeobox 3, opposite strand 1 (Six3os1),
            transcript variant 7, long non-coding RNA.
ACCESSION   NR_038085
VERSION     NR_038085.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Quintana-Urzainqui I, Kozic Z, Mitra S, Tian T, Manuel M, Mason JO
            and Price DJ.
  TITLE     Tissue-Specific Actions of Pax6 on Proliferation and
            Differentiation Balance in Developing Forebrain Are Foxg1 Dependent
  JOURNAL   iScience 10, 171-191 (2018)
   PUBMED   30529950
REFERENCE   2  (bases 1 to 1305)
  AUTHORS   Percival CJ, Green R, Roseman CC, Gatti DM, Morgan JL, Murray SA,
            Donahue LR, Mayeux JM, Pollard KM, Hua K, Pomp D, Marcucio R and
            Hallgrimsson B.
  TITLE     Developmental constraint through negative pleiotropy in the
            zygomatic arch
  JOURNAL   Evodevo 9, 3 (2018)
   PUBMED   29423138
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1305)
  AUTHORS   Rapicavoli NA, Poth EM, Zhu H and Blackshaw S.
  TITLE     The long noncoding RNA Six3OS acts in trans to regulate retinal
            development by modulating Six3 activity
  JOURNAL   Neural Dev 6, 32 (2011)
   PUBMED   21936910
  REMARK    GeneRIF: Six3OS regulates Six3 activity in developing retina by a
            mechanism via which promoter-associated long non-coding RNAs can
            modulate the activity of their associated protein coding genes
            during development.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1305)
  AUTHORS   Geng X, Lavado A, Lagutin OV, Liu W and Oliver G.
  TITLE     Expression of Six3 Opposite Strand (Six3OS) during mouse embryonic
            development
  JOURNAL   Gene Expr Patterns 7 (3), 252-257 (2007)
   PUBMED   17084678
REFERENCE   5  (bases 1 to 1305)
  AUTHORS   Alfano G, Vitiello C, Caccioppoli C, Caramico T, Carola A, Szego
            MJ, McInnes RR, Auricchio A and Banfi S.
  TITLE     Natural antisense transcripts associated with genes involved in eye
            development
  JOURNAL   Hum Mol Genet 14 (7), 913-923 (2005)
   PUBMED   15703187
REFERENCE   6  (bases 1 to 1305)
  AUTHORS   Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber
            G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong
            WH and Cepko CL.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   7  (bases 1 to 1305)
  AUTHORS   Mu X, Zhao S, Pershad R, Hsieh TF, Scarpa A, Wang SW, White RA,
            Beremand PD, Thomas TL, Gan L and Klein WH.
  TITLE     Gene expression in the developing mouse retina by EST sequencing
            and microarray analysis
  JOURNAL   Nucleic Acids Res 29 (24), 4983-4993 (2001)
   PUBMED   11812828
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK053722.1, CF737925.1, CF731326.1 and BF461098.1.
            
            Transcript Variant: This variant (7) has an alternate and much
            shorter 3' exon, compared to variant 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CF737925.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01164131, SAMN01164138
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-24                AK053722.1         3-26
            25-717              CF737925.1         1-693
            718-1180            CF731326.1         155-617
            1181-1305           BF461098.1         1-125               c
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 55.42 cM"
     gene            1..1305
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /note="SIX homeobox 3, opposite strand 1"
                     /db_xref="GeneID:100043902"
                     /db_xref="MGI:MGI:1925118"
     ncRNA           1..1305
                     /ncRNA_class="lncRNA"
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /product="SIX homeobox 3, opposite strand 1, transcript
                     variant 7"
                     /db_xref="GeneID:100043902"
                     /db_xref="MGI:MGI:1925118"
     exon            1..340
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /inference="alignment:Splign:2.1.0"
     exon            341..490
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /inference="alignment:Splign:2.1.0"
     exon            491..535
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /inference="alignment:Splign:2.1.0"
     exon            536..1290
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aaaaccctcgccactcatgaagaactgaggcaaaaggatcacagatgctgctcggggccagccctatactccctccagtgcctggtctccggtggacccgcggggctctgcagttctctggcggccgcgccttgtaagcgctaagccgggaggagggcgcaggcagggcgcacagctctgagcgcgaccctacccggctcgggcccgcagcaaccccgactgtccgagagcctctccccaagcaaggctctgcgccgccctctgagcccacctcctggccacaacgctgcctgcgcttctccagcccaggccggaagccctatgctgcctcccgaagccggactttctggaagcccatcttcgtatgctcaccagcccaccctcctacgctggtcagagtgagattgctaacctcaagaccccattcaatgccagctttcaactactgctgaagaccaatgtaggtcctggaatagaagaactgcagagtatccggagctggccgaccccagactgattctcaacaggtggctggtgatcagaggagaatcgccaggctgagggggaagcaaggaacatatggacccaagtaggatcctgaaagaatttcgagaagctccgagcccaaatcatacaggccctaagtattggtcaatcaccaggagtgaaacagaaacttagaccacacactcaagtcctgtttctgaatgaggggctcaagtgctaggccacaagtggccgctatggatgctgcattgtggagtcccacctgatccctccttcaaccacgcacctcagactgcaaggagagctagatgagaaggagctggggctcttgcgatctgcagaggcagcacgctggtcaggaagaacccagaacacctgcctcagacacagccagtctgtccacacacaaaaggcagggctgaggggctattaagtcaaacctggagtcacagccccaatgtcctcagacagtccccaaccctctgcagcaatgtggacatgtgtcagtgtggctgaaaagcttcttctctgagctttaacaactttctggtgtaacttctgagagggctgattgcttattcatgtggaagcaagacgcccagtccgttttgcctgtttttgctactctttgttgtctcggggggagtgttatggtagctgcaaatggcttctcccgtgacatttgctgacattcagtgaagtacatttatcagcgctcgcgagctcacctccgcacatgcaatccattttgttttgttcttcatggtaacccccttcccaacaaaaaaaaaaaaaaaa

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