2024-09-28 11:19:47, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NR_030769 4345 bp RNA linear ROD 05-AUG-2023 DEFINITION Mus musculus NK2 homeobox 2, opposite strand (Nkx2-2os), long non-coding RNA. ACCESSION NR_030769 VERSION NR_030769.3 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4345) AUTHORS Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM, Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming LG. TITLE The Vertebrate Genome Annotation browser 10 years on JOURNAL Nucleic Acids Res 42 (Database issue), D771-D779 (2014) PUBMED 24316575 REFERENCE 2 (bases 1 to 4345) AUTHORS Amaral PP, Clark MB, Gascoigne DK, Dinger ME and Mattick JS. TITLE lncRNAdb: a reference database for long noncoding RNAs JOURNAL Nucleic Acids Res 39 (Database issue), D146-D151 (2011) PUBMED 21112873 REFERENCE 3 (bases 1 to 4345) AUTHORS Tochitani S and Hayashizaki Y. TITLE Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation JOURNAL Biochem Biophys Res Commun 372 (4), 691-696 (2008) PUBMED 18538132 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK045921.1 and AL805918.5. On Feb 27, 2016 this sequence version replaced NR_030769.2. ##Evidence-Data-START## Transcript exon combination :: HG975423.1, AK045921.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMN00849380, SAMN01164131 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1363 AK045921.1 2-1364 1364-1364 AL805918.5 118375-118375 c 1365-1598 AK045921.1 1366-1599 1599-1599 AL805918.5 118140-118140 c 1600-3854 AK045921.1 1601-3855 3855-3855 AL805918.5 115884-115884 c 3856-4345 AK045921.1 3857-4346 FEATURES Location/Qualifiers source 1..4345 /organism="Mus musculus" /mol_type="transcribed RNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="2" /map="2 72.63 cM" gene 1..4345 /gene="Nkx2-2os" /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS" /note="NK2 homeobox 2, opposite strand" /db_xref="GeneID:100313531" /db_xref="MGI:MGI:3652259" ncRNA 1..4345 /ncRNA_class="lncRNA" /gene="Nkx2-2os" /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS" /product="NK2 homeobox 2, opposite strand" /db_xref="GeneID:100313531" /db_xref="MGI:MGI:3652259" exon 1..278 /gene="Nkx2-2os" /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS" /inference="alignment:Splign:2.1.0" exon 279..444 /gene="Nkx2-2os" /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS" /inference="alignment:Splign:2.1.0" exon 445..609 /gene="Nkx2-2os" /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS" /inference="alignment:Splign:2.1.0" exon 610..808 /gene="Nkx2-2os" /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS" /inference="alignment:Splign:2.1.0" exon 809..3986 /gene="Nkx2-2os" /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS" /inference="alignment:Splign:2.1.0" exon 3987..4345 /gene="Nkx2-2os" /gene_synonym="Gm14112; Nkx2-2as; Nkx2.2AS" /inference="alignment:Splign:2.1.0" ORIGIN
atgtgctgcagcgactgcgcgctgtaggcggaaaaggggatgcctgcctggaaggtggcggctgccaggtcctgggctttgagcgcgtggcacggtttgccgtccctgaccaagaccggcactgccacacggcgcggcgagggcagaggcgtcacctccatacctttctccgcccgggcacgtttcatcttgtagcgatggttctggaaccagatcttgacctgtgtcggcgtgagacggatgaggctggccaggtgctcgcgctcgggcgccgacaggttttaaagtggctgcaactcctcttcaagccttgctgtgccctacagtgtgatttccatgctattcccaccaacagaggaactttgtgctacttcttttccaatcttggcccaagagcatgatggaactgagcatgtgtgatgtctgagtaccaagccaccaaagattatccctacctacatcaaagatgatggccaagatggcaagacaactgggtggtcagctggctgagtgctccttttagtgcctgcatgggaatcacggaaggaatgactcttcacattcagtctctgtcagctttcagtctgagtttgggaccagtaagtgttgggtttgggcccttagtggcatgggtaccatgatgagagtgcataccgaagaaggcttggcatctcatagcagccagggaataataaagatgggaggggtcagagttccagaacctccttcaaggacccctcttccaacgatctcaccgcctcctatgcatttcacaccccatagcaccgcaagctggagactttactatgctggaggttattggtgcaacatacatctcattttcgtggtgacttgtcacatgaggtcagagggggaggctttccacgcatggtgacaagtgggtgctcagatgtggggccatttcccaccgtggattttcagactacagccgtgcctgtgagaacaaagtcaaaggaagctgaggagcagagaagatgggacctgttcaggtgaaggctctccagcagccagtgtgtgaaatagctgctctacttaaccgttgcgcgaggctgtgccaggctttgtggtactttgccctcactacctgttagtagctgagaggagatcatgcttcggaaaccaagccacttggttgcagatgttcagttcaaactatgcattacataacagtcattatttaacttcagtgctttagcgccctccagtggaatatggatgtcatcacatggaatgcttcaaggatgaaatgatgtcttgaggcatctcctggcacagaatgatcaccaccttgtgagtcttatccactgacagtaacatcctaaagtctctggtcctctcccctctagaagattccccagcctccaaggtggcaacctccatcaagatgctgatagtgcttgtagtttccggcagcaacttgccagacccagtggtccagatcttccttagtaagtgagggcaagattagagagaggaacacttccttatataaacggagaagtttgggttcagaaaggagagtcatgtaatttgttacaccatgaagttgacagcagagctagctccagttctcttgtctcctctgatgtctcttctcagagacatgcattctgacaaaaaaaatggaaggcgggggttgcttgtggaacagcggaattggaaatgttgtcagaagactaacttgctccagtgagagaatgggcagagttcagttatgtgcttcctatgacgttttagtcagtggccgattgtgtgtgaatgacagcatcaccagggagaccaagtagggagtagccacaccatttagatatatgtaaatgtactctactggttataatcacttttaaagtgtgtgtacacgtgcgtgtgcatggggggggggaaggtagaggctcatgtacgcctgagaaagtcagatgatggcctcaggtctcaggagtgctgtctatctccctttcgaaacaatttcttattagcctcacactcaaccaattatgttatacagctaaacagcaagtctaggaactctccccttgtcccagcctccccagtgttgagattacctatatacgccacagtacacagctctttttccttggggtctgggagattgaacccaggtcctcaggagattgaacccagtgagcattttaccaactgagtccatttccgtaactctgtggtccatcttgattgtcaccctgagggtaaggagagctacttaggagacacacctttgggtatatctgttacagtgtttccagaaagtttgctctgagatgggagggcctgccccagatgtttatggccctgtttcaccgctggggcccaaggatgaataaggagaaagtgcggtgagcaccgtcctttgtatgttcgtttctctcagctgcctgagtgcaaactcaacttggccagacttttgttgccttccttcctggctgcgatggattgtcccgtcaggctataagtcaaaataaaatctttcttctttatgtttcgtttgctgagcattttatcagcacagtgagatagaccaacgaatacctcaaacagcccatgatgtttgcacagtgacacaaggtctaccaacacatttctcaggactgatctttcagccacacacgactctggaaacactccctgtactcaggaggccacagtagtgacacagataacctttgtcgcctttgccttggagtgggtgccacagggcagagactactggaagcccaaagagcaacagaaaggaggcacctctgcaggaggctagagatggagacactctttggaggcaggcagctgccctccctcacatagaaacagccctctctcttcttcaatattgacctgcagagaaagaaaaaaagaacccatcttaatactttttcagtagatcatgaagcagtttatttaatattatttggataacaagcctccacatgaatgggattcgaatgtcaattgtcttagggggaaaaagatttattggttggtaaatattgagaaaggaacgctgataaagaccggcttcagctgcggcctcggccggggacgggagaacaggcctgtgttgtattttggggccctgggaaggcaaaaactggtgaatgtctgcctttgttggtgggtgtaaaagtggagcccaccacaaataatttcttatttctgttcacatagattttaaattatgtagctcccctaccttgttaagcattaaagcggtcttgtttaaggaaaaggcacttaaataatgaagcttatgtagtttgttttcagacatcaatatctggctttgagtggcacaaagagataaaggaatgtggattcacggcttactgagatgcttggcaattctaattcaacccgactgcgaatggacacaagactgttgtgactcctcctgaggagagagaaggctgggtgagcacgtggtttggggaaattgtattctcttcttcaagttcttctgtttccgaacatttaatcccactgttctcatctttaatgaaggtctctttggtaaagaatctttttcctggaatggcagagggcaacagaagctggattcagaagcacacagagctggggaatgtgcgctgcagtgggactcagacagggaaaggctgccatcttgtggtcggcttggtgctctgcagtctgtgaactgtccctctgcagaagccagcaaccctggagggaaggagtctgaatgctggatttctgcaggacaatgtggatgcctttaggaattactctgactgtgttcaggtgccctccgaggtagcctccagcgggtattctgcacgtatatcgtcattcctggggcaaggctaggcctcacagacacttggcagactgagcaggacaaccagcaaacagtgagaacaaacagccagacacatatgcaccatgtacttactgtgttcctggaaggcagccaactgaaaaacacccaggacaagaaaaagtcagatggatggatgaacactacccacgtccacaccaagtcactgggaagcattcgccttacttagaagaagctcctactttttacttcctgctcatcagcttcacagaaggggggggtgaataaaaaaagttagaggaatcagaagacccctctgcagctctgcagcaatgtcatgccatcttttcttgataactgcagacaattcagcttgaccaggatacccttggatgggagtttggaacattcctaaacatgcttatggttgttttccttctggttgtgtggtcttcaactgataattccacagtactaacatgtaattttagtgaattaaactcaagccatccaatt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]