LOCUS       NR_027899                794 bp    RNA     linear   ROD 05-AUG-2023
DEFINITION  Mus musculus homeobox D3, opposite strand 1 (Hoxd3os1), long
            non-coding RNA.
ACCESSION   NR_027899 XM_984549 XM_992510
VERSION     NR_027899.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Aboudehen K, Farahani S, Kanchwala M, Chan SC, Avdulov S, Mickelson
            A, Lee D, Gearhart MD, Patel V, Xing C and Igarashi P.
  TITLE     Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant
            polycystic kidney disease and regulates mTOR signaling
  JOURNAL   J Biol Chem 293 (24), 9388-9398 (2018)
   PUBMED   29716997
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Harrow JL, Steward CA, Frankish A, Gilbert JG, Gonzalez JM,
            Loveland JE, Mudge J, Sheppard D, Thomas M, Trevanion S and Wilming
            LG.
  TITLE     The Vertebrate Genome Annotation browser 10 years on
  JOURNAL   Nucleic Acids Res 42 (Database issue), D771-D779 (2014)
   PUBMED   24316575
REFERENCE   3  (bases 1 to 794)
  AUTHORS   Feenstra JM, Kanaya K, Pira CU, Hoffman SE, Eppey RJ and Oberg KC.
  TITLE     Detection of genes regulated by Lmx1b during limb dorsalization
  JOURNAL   Dev Growth Differ 54 (4), 451-462 (2012)
   PUBMED   22417325
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL928644.12.
            
            On or before Jun 27, 2009 this sequence version replaced
            XM_984549.1, XM_992510.1.
            
            Sequence Note: The RefSeq transcript was derived from the reference
            genome assembly. The genomic coordinates were determined from
            alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK007148.1, BY707232.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN00849384
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-425               AL928644.12        200638-201062       c
            426-556             AL928644.12        199203-199333       c
            557-794             AL928644.12        194976-195213       c
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="2"
                     /map="2 44.13 cM"
     gene            1..794
                     /gene="Hoxd3os1"
                     /gene_synonym="1700064D17Rik; 1700109F18Rik"
                     /note="homeobox D3, opposite strand 1"
                     /db_xref="GeneID:73429"
                     /db_xref="MGI:MGI:1923875"
     ncRNA           1..794
                     /ncRNA_class="lncRNA"
                     /gene="Hoxd3os1"
                     /gene_synonym="1700064D17Rik; 1700109F18Rik"
                     /product="homeobox D3, opposite strand 1"
                     /db_xref="GeneID:73429"
                     /db_xref="MGI:MGI:1923875"
     exon            1..425
                     /gene="Hoxd3os1"
                     /gene_synonym="1700064D17Rik; 1700109F18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            426..556
                     /gene="Hoxd3os1"
                     /gene_synonym="1700064D17Rik; 1700109F18Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            557..794
                     /gene="Hoxd3os1"
                     /gene_synonym="1700064D17Rik; 1700109F18Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agagatgcctggttgagggcagctggcggacaagtgatcacaccacccacccttgtctgatgccacgcacgctgagcgctgagcgagctgaggtggaaggcggggcagaagaacgggtggctcttgtgtcctcccattcccctcccacccagggcatgggcggcatcggcgaagccagcgagacgcttgtcctacagcgcctcctcctggacaaagctccagacaaccgaaaagggacaccaccagccctagaaaacctagactaggcacttccttcctgggacatcagaagttgattctgccacgtccactggagaggcaaaaaggagtccaaaagtccttgaggctacctcttaccgccccacccccagctcagacaacaagcctgtgacccagaagcgagcatctcatctctccttgattagactttccagagactgcactcccagctcttgtgtccacccaagaagaaaccaaggccaggacattggctccccagtctataaatagaagtttggacccaggacgctgggagttttgcccagaaacctctaagacacccaaggattcagcaaacatccaagatatggaggagacactagatgtgaattcttatgcagtgaattaaacaatatgttattacacaaggaaatgggcaagctggtgcttattccctggtcgatacacatagaagtgggtaaagagattgttcaattctaaaacattctaaaaattaatctcaatttgcctctgtatcatctgccctctatccaaataaaagcagagcttatccc

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