LOCUS       NR_015385               3240 bp    RNA     linear   ROD 07-AUG-2023
DEFINITION  Mus musculus SIX homeobox 3, opposite strand 1 (Six3os1),
            transcript variant 4, long non-coding RNA.
ACCESSION   NR_015385 XM_001479660 XM_001481207
VERSION     NR_015385.2
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3240)
  AUTHORS   Quintana-Urzainqui I, Kozic Z, Mitra S, Tian T, Manuel M, Mason JO
            and Price DJ.
  TITLE     Tissue-Specific Actions of Pax6 on Proliferation and
            Differentiation Balance in Developing Forebrain Are Foxg1 Dependent
  JOURNAL   iScience 10, 171-191 (2018)
   PUBMED   30529950
REFERENCE   2  (bases 1 to 3240)
  AUTHORS   Percival CJ, Green R, Roseman CC, Gatti DM, Morgan JL, Murray SA,
            Donahue LR, Mayeux JM, Pollard KM, Hua K, Pomp D, Marcucio R and
            Hallgrimsson B.
  TITLE     Developmental constraint through negative pleiotropy in the
            zygomatic arch
  JOURNAL   Evodevo 9, 3 (2018)
   PUBMED   29423138
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3240)
  AUTHORS   Rapicavoli NA, Poth EM, Zhu H and Blackshaw S.
  TITLE     The long noncoding RNA Six3OS acts in trans to regulate retinal
            development by modulating Six3 activity
  JOURNAL   Neural Dev 6, 32 (2011)
   PUBMED   21936910
  REMARK    GeneRIF: Six3OS regulates Six3 activity in developing retina by a
            mechanism via which promoter-associated long non-coding RNAs can
            modulate the activity of their associated protein coding genes
            during development.
            Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3240)
  AUTHORS   Geng X, Lavado A, Lagutin OV, Liu W and Oliver G.
  TITLE     Expression of Six3 Opposite Strand (Six3OS) during mouse embryonic
            development
  JOURNAL   Gene Expr Patterns 7 (3), 252-257 (2007)
   PUBMED   17084678
REFERENCE   5  (bases 1 to 3240)
  AUTHORS   Alfano G, Vitiello C, Caccioppoli C, Caramico T, Carola A, Szego
            MJ, McInnes RR, Auricchio A and Banfi S.
  TITLE     Natural antisense transcripts associated with genes involved in eye
            development
  JOURNAL   Hum Mol Genet 14 (7), 913-923 (2005)
   PUBMED   15703187
REFERENCE   6  (bases 1 to 3240)
  AUTHORS   Blackshaw S, Harpavat S, Trimarchi J, Cai L, Huang H, Kuo WP, Weber
            G, Lee K, Fraioli RE, Cho SH, Yung R, Asch E, Ohno-Machado L, Wong
            WH and Cepko CL.
  TITLE     Genomic analysis of mouse retinal development
  JOURNAL   PLoS Biol 2 (9), E247 (2004)
   PUBMED   15226823
REFERENCE   7  (bases 1 to 3240)
  AUTHORS   Mu X, Zhao S, Pershad R, Hsieh TF, Scarpa A, Wang SW, White RA,
            Beremand PD, Thomas TL, Gan L and Klein WH.
  TITLE     Gene expression in the developing mouse retina by EST sequencing
            and microarray analysis
  JOURNAL   Nucleic Acids Res 29 (24), 4983-4993 (2001)
   PUBMED   11812828
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK053722.1, AY590889.1 and AC166821.2.
            
            On Apr 6, 2011 this sequence version replaced NR_015385.1.
            
            Transcript Variant: This variant (4) has an additional segment in
            one region and lacks a segment in another region, compared to
            variant 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY590889.1 [ECO:0000332]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-173               AK053722.1         3-175
            174-710             AY590889.1         2-538
            711-3240            AC166821.2         67003-69532         c
FEATURES             Location/Qualifiers
     source          1..3240
                     /organism="Mus musculus"
                     /mol_type="transcribed RNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="17"
                     /map="17 55.42 cM"
     gene            1..3240
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /note="SIX homeobox 3, opposite strand 1"
                     /db_xref="GeneID:100043902"
                     /db_xref="MGI:MGI:1925118"
     ncRNA           1..3240
                     /ncRNA_class="lncRNA"
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /product="SIX homeobox 3, opposite strand 1, transcript
                     variant 4"
                     /db_xref="GeneID:100043902"
                     /db_xref="MGI:MGI:1925118"
     exon            1..340
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /inference="alignment:Splign:2.1.0"
     exon            341..581
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /inference="alignment:Splign:2.1.0"
     exon            582..3240
                     /gene="Six3os1"
                     /gene_synonym="D17Mgi26; E130112H22Rik; Rncr1; Six3os"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aaaaccctcgccactcatgaagaactgaggcaaaaggatcacagatgctgctcggggccagccctatactccctccagtgcctggtctccggtggacccgcggggctctgcagttctctggcggccgcgccttgtaagcgctaagccgggaggagggcgcaggcagggcgcacagctctgagcgcgaccctacccggctcgggcccgcagcaaccccgactgtccgagagcctctccccaagcaaggctctgcgccgccctctgagcccacctcctggccacaacgctgcctgcgcttctccagcccaggccggaagccctatgctgcctcccgaagccgttggaactcaaggtcccctttcactcccttcttgagtacccctagcacttgctgggttggtggagcagggaactctcggttctccactcaggactttctggaagcccatcttcgtatgctcaccagcccaccctcctacgctggtcagagtgagattgctaacctcaagaccccattcaatgccagctttcaactactgctgaagaccaatgtaggtcctggaatagaagaactgcagagtatgcagacaaaagctaccatgtccgcttggagtgacgcccagacacgcacagagatgtacaggaagccaaggagagtgggatccaccagagtacagtacaagtacagagtacagtgcaagatgcccagtggccctggagaaaaaccttcgttgactcttctgtatggaaagtttctgaagaaagggccaaggaatgatctgccccagaggctgcctttaggctcccatacctgctctgtttggagacacccagaagaggccagtacagcaaagactctttttggtttggttatttctgttgcttgttgtctttttttcatcctttgcctgggaaattgtgctctggaatagggcttgagtagacagcacaggcctccagtagataacaagagattctcaatctccaatgaggacattccgttctaaggaagcttccagataggggaaagccctgttttgtcccccttttctcctctgagatctgaaaaaatagaaagaaaaaaaaagaaaaacaaaacaaatataaaaactatagcccaatcccatgtacatcaaataaatccacaaggaatatgctagatcaagctaaattatgtatttaactcattttcttttgtgagatactgagaagtcttcaacttcctctattccaggcagggatcgaggacctggcctggcagaggttccaccaccagggtttcccacagtggttctgggactaggcgtaaggtgtcctgacttgttttctctgtcacctcttctggggaactggggaactgtcccagacaatggctgccccagttccctctagaagagacagcccccacccccagaacccgttgccctccaacctcacctcattttctcttgagctcattctccgagctcttaaagtagtaggtgtgagtcttggaccatttctttaaaagaaacaactaaggaaagggagggaggggaggagggaggaggggagcgggaaggagagctacctcctagactaacgcgtccaggaaccactctctaaggagcaaaagagagcctgtgttgtaaagtagaagtgatcccccgacattgctgcagggcgccttgcaacagatgtaactgtccactgaagagacagagggtgggcatggggaagattttttttcctcccttttgtgaacagctcttacacttttccaagacacattgagttcctggacatttttgtgaatttgttcttgattgtgttttgaacaataaactgtgaaaatcaacttcaagcccacacaatcagaatctttcttgggagggcaggttctttcagcgctgtttttctccaggtcgcttttatcttacccccaatgggagtcacctgctgatgctcctcgggaggagactgtaactgaaagacggaagtgaatgcagacacagcatcctctgagccaaaccgttgctttggttccttctagcttaggatgccgaacactggctggctttgaacaccctctacttcgctaagaagtttagagcctttctcacaacaaaccacagcgttttagaactggaaatgtttcttctgattttccagtcttaggacaattttcgaactctaacttaaaaaaaaatttgtttatgggggtttagctagaacacttgtagcattcgcttctcaaggaaagatcaactgttttctcataaccccaactgctccacacacttcataggatataatgtattttctttacttatccttgtgccttctgcccaggacatagaactaggggcaaaactttggaggtctatgacctcttgatagcacctgtaattgttaggcttttgttcttgtgccttgtaaatctctcatgtacgtctatgaaaatatgcattgcatgggtgtgatcctatcaagttgtccacactttctcaacaaccactgatgagtgaaaccatttctattgcccagggcaaagggctaatcgccttgtgggtctagagttgtcataggataatatccggtgtgtgtgtgatatgacagttattactttcaagaataaattaaaataaccagatacccctttaatactttcctcaacagcgtcaatgctctagagatgggacctcgccttccaaggtgtcttcactatcacagggcccgggctctctgcctcagcccaaccctgggcttgcgctcagagaggaggtattccgacggaaaaaaatcccatacatttttaactacagtgattactaaattaatagcaggcaccaagacagatgtcaaaacgtcttgaaaatgtttatctgtgaataattgagaaggtagtgggacgcattatctgattgtgtaatgaaatatgtatgaggaacagctgtttgcagcagccccttccccttgccgccttagccagggcccttctctcgcaagctttcttctactttcttccacctttttcttccttctactttctagttcgctctcttcttccttaactgctcgcacggctttggctgcagtgaacccagagtcgcctggttctctgatgaaggttagccacaaggtttcctctaagccttgctggattggcgttccgtagtgggatgaggcttcgttgtctgctgttctggccatcgcgccttccggccaggctgcccgctgggtctccatggagtctgcggg

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