2024-09-28 11:19:03, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_181278 4691 bp mRNA linear ROD 01-JUN-2024 DEFINITION Mus musculus RIKEN cDNA B230219D22 gene (B230219D22Rik), mRNA. ACCESSION NM_181278 NM_198009 VERSION NM_181278.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 4691) AUTHORS Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A., Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L., Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E. TITLE BayGenomics: a resource of insertional mutations in mouse embryonic stem cells JOURNAL Nucleic Acids Res 31 (1), 278-281 (2003) PUBMED 12520002 COMMENT PREDICTED REFSEQ: This record has not been reviewed and the function is unknown. The reference sequence was derived from BC051430.1. On or before Oct 15, 2003 this sequence version replaced NM_198009.1, NM_181278.1. ##Evidence-Data-START## Transcript exon combination :: BC051430.1, SRR1660821.171954.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..4691 /organism="Mus musculus" /mol_type="mRNA" /strain="FVB/N" /db_xref="taxon:10090" /chromosome="13" /map="13 30.06 cM" gene 1..4691 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="RIKEN cDNA B230219D22 gene" /db_xref="GeneID:78521" /db_xref="MGI:MGI:1925771" exon 1..224 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /inference="alignment:Splign:2.1.0" exon 225..4652 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /inference="alignment:Splign:2.1.0" CDS 228..794 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /codon_start=1 /product="UPF0461 protein C5orf24 homolog" /protein_id="NP_851795.1" /db_xref="CCDS:CCDS26552.1" /db_xref="GeneID:78521" /db_xref="MGI:MGI:1925771" /translation="
MMHPVAGSNPAFCGPGKPSCLNEDAMRAADQFDLYSSQQNKYSHTVSHKPMVCQRQDPLNETHLQPTSGRNIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHSRVVHGLQETSGEVKPPSE"
misc_feature 228..791 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="Family of unknown function (DUF5568); Region: DUF5568; pfam17724" /db_xref="CDD:465471" misc_feature 336..338 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q7Z6I8; propagated from UniProtKB/Swiss-Prot (Q80X32.1); phosphorylation site" misc_feature 465..650 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="propagated from UniProtKB/Swiss-Prot (Q80X32.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 588..590 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q7Z6I8; propagated from UniProtKB/Swiss-Prot (Q80X32.1); phosphorylation site" misc_feature 765..767 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q7Z6I8; propagated from UniProtKB/Swiss-Prot (Q80X32.1); phosphorylation site" regulatory 4629..4634 /regulatory_class="polyA_signal_sequence" /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="hexamer: AATAAA" polyA_site 4652 /gene="B230219D22Rik" /gene_synonym="D530037I19Rik" /note="major polyA site" ORIGIN
ccggggctgtggcggcttcttcctcccgcgtccggggccccgcggtgagggctccagggagtcgggcgctggcgtggccttcgccgccgccgccgccggccctctgccgtgactggacagggccgcccggagcgggcgcggccggagtgaacggaacgggcgggagctttcctgcctatgggcggcccctgggcgctctgagggccgggctccgagcggccgagaaaatgatgcaccccgttgccggcagtaatccagcgttctgtgggcctggcaagccttcctgcctcaatgaagatgccatgagagctgctgatcagttcgatctgtattcctcccagcaaaacaagtacagccacacagtcagccacaaaccaatggtttgtcagaggcaagacccattaaatgaaacacacttgcagcctaccagtggcagaaacatagagataaaagatgaactaaagaaaaagaaaaacctcaatcgatctggtaagcgaggccggccttcgggaactaccaagtcagcaggataccggaccagcacaggcagacccctgggaactaccaaagcagctggatttaaaacaagtccaggcagacctttgggtacaaccaaagctgcaggatacaaagtcagcccagggagacctccaggtagcattaaagctctgtcccgccttgcagatcttggctatggctgtggcactgctgcctttccttaccctatgatgcatagtagagtggtgcacgggcttcaggaaacgagtggtgaagtcaagccgcccagcgagtgagcgaggcaggagagcaggcgttaggagcaggttgttagttaccccaaagcgtcttgttttaatttgacatgctcttaccacgtggactccccagtgctgtttctgttggctctccctcaccctgcacttctttttctttctttttggcttagaagttgccacaattgagagatgcactttgggcaggagtagtacattgtgtctgtattgtacacagttcactcacaaccctcagcagctaagtcatttttgttttccctttgtgctgttctaagtggactcctcccatgctaagcagctgcccaagttaacttttatttgtgagtaatccattgtgaggcattgtaactgaaggggcagaacagcaactagtgagcagatcagagggatggctgtgtgagtttagaactctgaaataagacgcagctgtctggatgctttggaacttaaaacacagcttcttatttattgattcgcatgacattagttgatcattaatactaaagcgttgtttagtatctgccttgcagagattatagttacaggatgtgtgtttttcaattgcctaagagtataggcagcgccgggcgtggtagcgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggccagcctggtcctacaaagtgagttccaggacagccagggctacacagagaaaccctgtctcaaaaacaaaaacaaaaacaaaaacaaagagtataggcagcaaacactacaaacaactcagacttaaaacccacacattatagttaatatatgggaaagagaacccttgaaagtctgcatgtaactataatcattctgttttgtctttcatatacttagtgagtttcaaagtattatatttaaaaacatttattactattgttcatttatttggaatttttttagtttttcggagtaattgttattacactgcgttagtacataactgcattttcaggtttatatctaccaaaggacacaaattgagtggttgactgcacaactgatctaagcagaaagcagtttcctggctatcgagacccaaataccgataaatgcaactcattattcatgaaacctgtaaaatgagtgctggttagcataaaaatgtcatcatggcctcttctgaaagaagtctccctagtgttaatacacattttatttattctgagttctaagtaaaatattatgaactttgaagttgagaagctttccctgggccaggtgtggtggtccatgaatttgatctcagcatttgggaggctgaggcaggcagatctctgagtttgaagtctatatagtgccaggacagccaatgctaggtagagagagaccctgtcttaaaaaaacaaaacaaaagaaaagctttttactgaacttaaaaaatgattttacttgcattttaaaatgcctttgagattaaaatatagatttacatgacttaaaaactttacaaataatcagaaatataaaaggacacatactggttggctaggcttgctcagtccatgcaaactgactgactgtaaatcccatgtttcagacctttatcaggggacaagcagcaaatctcaggtgcccatgatagctgacacagcggctggacccctgctcctacaggaagtgctgttacaatgcatgtgggttcagtaacctcagtggtagagcttcacacaaaccatagaagacagtgagcagtgctgggtgaccatttaaccactaaagtgcttcaaagagtttcttcttgcagaagcctagaatataaaaataatttacttaggacagtgtaacttctgacacaggcaaatgcttgcatcttcattgatgtgttcatctggtcacagtatctgtcacttagctgtttctgaagttgttcagcagctggctgttttaaaatccttgcacagctagttcctgaatacagttgaaatagtctagtgtggtatcatctcaccaccaaatgttaaggacttgggtgcatgttgtgtttcatggtgagtccacacggcatccttttgagtttgatttcattcctggctttgtaccttgtcatttcttcttgcccttcccacacgcatccccttccctccgcttgccgcacatgtactcagtggtgctgtgctgcgctgcgtcagcagacagagtgggctactgcataatgcgtttactgtataatgcgtcagaagatagagtgggctactgcataatgcgtttccgatacgtgttcatgagatgggacattggtgtaaggcgatatgtttataacagtgtttatcaggagctctatcccaggaaagggggatggatggatggctacagttgtgactggagcctgaattcactgttcctgtgagcagtcacctggaatattagacgtgtgcactggtgaacacctgatcctacttttctccttgtggacagtttactagtgtcagctggagaggcacggtgaggacgggagtgaagtcttcacatacaaatatttctacttctacatgatctaaagactgcattctgcatcttttgtaacatggtcttttgtcatgacagacactgaaatagcatgtgaaacagttgcctagatgccagtatattcagttggggaaaactgtcgtctcccctgccccacccccactgtataattgttccttaaaaggtaaattgctaattttatactgtgtgattctattcttcataaataggtttcactattctatattaaaactttgtcagaaaatgatgtgctattcaagtaagtttgttttacttttttcttaaaaggatattttaacatgccttatttattattgttatcaaaacaaataaggagtcaatacagatgaaaacgtcattttccacaggtatcaccttgcctaactaatctttagtatggggtgattttgatactatctttggagttttgcactggatatttaaaaatatatatattggcacaatatattgaaaaattaaatagtatttggtttaatttttagtatttgaaacattttttaattagtgtttaaatcagattaacaattctttgtatttttaattacttttttaaaaggaacatctgaaaaatggtatttagtcattccaaactggtatttgtgtgaatttacatatattttcacgaaataagaatataattctttgaggtaaaatctggatccatttattatgaggttaaagatgcttcatccagtgtaataatgactacagtgtttaagtttaaacggtgaacttcttcatactttaagaagctttaagagaacagttcaggggatactacgatgattgctctgtcagttccttgtctttatgcagtaaaattttatgatccgttacagtaacataacaattcacagtagtctcgggcataagaagttttgatgctcttttgtttttgtctgttcaagcccaatgactgcgctcaaatctaagatgtatctaatatttgctttttcccctttccttccaagtagacagacctgtgctctcacatacaatgtatttaagttttttagaagtgatactgtagtaagtcaattgtgtgatttaatcaggccactctgattctttgattcacaatttcctttttccacagacaattatgaaacaaataattgccagttaactgataataagcacgttgtcctctgctgtaaaaagtctgaatagatactgtgtatgttttaatgtccatgaacttgagctactcgtgtgcaattatgtgtatggaatggagtagtgttcatgatttgtatctacatcatcatatggatgtatatttattaataaagtcatcactttaaaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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