LOCUS       NM_146236               1214 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus transcription elongation factor A (SII)-like 1
            (Tceal1), transcript variant 1, mRNA.
ACCESSION   NM_146236
VERSION     NM_146236.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1214)
  AUTHORS   Navas-Perez E, Vicente-Garcia C, Mirra S, Burguera D,
            Fernandez-Castillo N, Ferran JL, Lopez-Mayorga M, Alaiz-Noya M,
            Suarez-Pereira I, Anton-Galindo E, Ulloa F, Herrera-Ubeda C, Cusco
            P, Falcon-Moya R, Rodriguez-Moreno A, D'Aniello S, Cormand B,
            Marfany G, Soriano E, Carrion AM, Carvajal JJ and Garcia-Fernandez
            J.
  TITLE     Characterization of an eutherian gene cluster generated after
            transposon domestication identifies Bex3 as relevant for advanced
            neurological functions
  JOURNAL   Genome Biol 21 (1), 267 (2020)
   PUBMED   33100228
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1214)
  AUTHORS   Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
            Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
            Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
            Okado H, Hashimoto M and Asahara H.
  TITLE     A systems approach reveals that the myogenesis genome network is
            regulated by the transcriptional repressor RP58
  JOURNAL   Dev Cell 17 (6), 836-848 (2009)
   PUBMED   20059953
REFERENCE   3  (bases 1 to 1214)
  AUTHORS   Nelson PS, Pritchard C, Abbott D and Clegg N.
  TITLE     The human (PEDB) and mouse (mPEDB) Prostate Expression Databases
  JOURNAL   Nucleic Acids Res 30 (1), 218-220 (2002)
   PUBMED   11752298
REFERENCE   4  (bases 1 to 1214)
  AUTHORS   Suzuki H, Fukunishi Y, Kagawa I, Saito R, Oda H, Endo T, Kondo S,
            Bono H, Okazaki Y and Hayashizaki Y.
  TITLE     Protein-protein interaction panel using mouse full-length cDNAs
  JOURNAL   Genome Res 11 (10), 1758-1765 (2001)
   PUBMED   11591653
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL671887.18, DV051075.1 and CK618090.1.
            
            On Sep 30, 2017 this sequence version replaced NM_146236.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083157.1, DV067983.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-28                AL671887.18        62791-62818
            29-852              DV051075.1         41-864
            853-1021            AL671887.18        64337-64505
            1022-1214           CK618090.1         1-193               c
FEATURES             Location/Qualifiers
     source          1..1214
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 59.1 cM"
     gene            1..1214
                     /gene="Tceal1"
                     /gene_synonym="0610011M09Rik; P21; pp21; SIIR"
                     /note="transcription elongation factor A (SII)-like 1"
                     /db_xref="GeneID:237052"
                     /db_xref="MGI:MGI:2385317"
     exon            1..107
                     /gene="Tceal1"
                     /gene_synonym="0610011M09Rik; P21; pp21; SIIR"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    87..89
                     /gene="Tceal1"
                     /gene_synonym="0610011M09Rik; P21; pp21; SIIR"
                     /note="upstream in-frame stop codon"
     exon            108..1198
                     /gene="Tceal1"
                     /gene_synonym="0610011M09Rik; P21; pp21; SIIR"
                     /inference="alignment:Splign:2.1.0"
     CDS             135..632
                     /gene="Tceal1"
                     /gene_synonym="0610011M09Rik; P21; pp21; SIIR"
                     /note="TCEA-like protein 1; transcription elongation
                     factor S-II protein-like 1"
                     /codon_start=1
                     /product="transcription elongation factor A protein-like
                     1"
                     /protein_id="NP_666348.1"
                     /db_xref="CCDS:CCDS30421.1"
                     /db_xref="GeneID:237052"
                     /db_xref="MGI:MGI:2385317"
                     /translation="

MENTRSENEEQPESTLKIDEEQPAVEQSPENQCSEEDQSSEDLSSEEQSSEEEFFPEELLPELLPEMLLSEDRPPQECLSQKNQFEDRIPMEQPPCGVGKHKLEEGSFKERLARIRPQFIGDIHGRNLSNEEMIQAADELEEMKRVRNKLMIMHWKAKRSRPYPI"

     misc_feature    135..437
                     /gene="Tceal1"
                     /gene_synonym="0610011M09Rik; P21; pp21; SIIR"
                     /note="propagated from UniProtKB/Swiss-Prot (Q921P9.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    <411..629
                     /gene="Tceal1"
                     /gene_synonym="0610011M09Rik; P21; pp21; SIIR"
                     /note="Brain expressed X-linked like family; Region: BEX;
                     pfam04538"
                     /db_xref="CDD:427996"
ORIGIN      

acgtgaccaggagcctatgtctgcccaagtccctctctcatcccggtcctttttgcctgtccagaccccgtctttctattaccccttgatcgagaaggaaagcagaaaataattgcttgaagaaacttctcaacatggaaaacacgcgcagtgaaaatgaagagcaaccagagagcactctgaagatcgatgaagagcagcctgcagtggagcagtctcctgaaaatcagtgctctgaggaggatcaatcctcggaggatctgtcctccgaggagcagtcctccgaggaggagttctttcctgaagagctcctgcccgagctgctcccagagatgctgctgtctgaagatcgtcctccgcaggagtgcctctcacagaagaaccagttcgaagaccgtattcccatggagcaacctccctgcggggtgggcaaacacaagctagaggagggaagcttcaaagaaagactggcccgtatccgccctcaattcataggagacattcatggcagaaatttaagtaatgaagaaatgatacaggcagcggatgagttggaagagatgaagagagtacgaaacaaactgatgataatgcattggaaggcaaaacggagccgcccttaccctatttaatatgctccacttttcattgttttgcttgttaatagcatttgctacctggcccttgtgtttgcatcttcttatatgccctttcccatcttagttgtaacagttttattcaggttgtgcagttttatttcaagtgtttgacatgtaactggcacgggtctttgtttttgtttttgttttcagaccttctaaaatctgagtgtgatccatttgcatggaaagatatacattatatatgtgaggtgataaaagcaaaaggtatatgcatagcatcccatttttgtaaaaggaaaacacatttatatattaatatgcaaagaaaagctaaaaactatatacttaaagactaacattggttatctgtgtggtaaagataataagtgatttttatatttttttaaattttgctttatctaaagtttcatttttcatgatgaatacattttatttatgttgcacaacaaacaatataatgaaaaatgtgaagcaagcctaaaatcaaaaagtgttagtcagcttataaagaaaatgtgctccttaataaatatttatcagaacttaaaagttaaaaaaaaaaaaaaaaaa

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