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Previous release (v1)
2024-05-03 00:25:53, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_031494 6400 bp mRNA linear ROD 14-AUG-2022
DEFINITION Mus musculus zinc finger protein 275 (Zfp275), transcript variant
1, mRNA.
ACCESSION NM_031494
VERSION NM_031494.2
KEYWORDS RefSeq; RefSeq Select.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 6400)
AUTHORS Wiese CB, Ireland S, Fleming NL, Yu J, Valerius MT, Georgas K, Chiu
HS, Brennan J, Armstrong J, Little MH, McMahon AP and
Southard-Smith EM.
TITLE A genome-wide screen to identify transcription factors expressed in
pelvic Ganglia of the lower urinary tract
JOURNAL Front Neurosci 6, 130 (2012)
PUBMED 22988430
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 6400)
AUTHORS Yokoyama S, Ito Y, Ueno-Kudoh H, Shimizu H, Uchibe K, Albini S,
Mitsuoka K, Miyaki S, Kiso M, Nagai A, Hikata T, Osada T, Fukuda N,
Yamashita S, Harada D, Mezzano V, Kasai M, Puri PL, Hayashizaki Y,
Okado H, Hashimoto M and Asahara H.
TITLE A systems approach reveals that the myogenesis genome network is
regulated by the transcriptional repressor RP58
JOURNAL Dev Cell 17 (6), 836-848 (2009)
PUBMED 20059953
REFERENCE 3 (bases 1 to 6400)
AUTHORS Millien G, Beane J, Lenburg M, Tsao PN, Lu J, Spira A and Ramirez
MI.
TITLE Characterization of the mid-foregut transcriptome identifies genes
regulated during lung bud induction
JOURNAL Gene Expr Patterns 8 (2), 124-139 (2008)
PUBMED 18023262
REFERENCE 4 (bases 1 to 6400)
AUTHORS Raefski AS and O'Neill MJ.
TITLE Identification of a cluster of X-linked imprinted genes in mice
JOURNAL Nat Genet 37 (6), 620-624 (2005)
PUBMED 15908953
REFERENCE 5 (bases 1 to 6400)
AUTHORS Davies W, Isles A, Smith R, Karunadasa D, Burrmann D, Humby T,
Ojarikre O, Biggin C, Skuse D, Burgoyne P and Wilkinson L.
TITLE Xlr3b is a new imprinted candidate for X-linked parent-of-origin
effects on cognitive function in mice
JOURNAL Nat Genet 37 (6), 625-629 (2005)
PUBMED 15908950
REFERENCE 6 (bases 1 to 6400)
AUTHORS Faust CJ and Herman GE.
TITLE Physical mapping of the loci Gabra3, DXPas8, CamL1, and Rsvp in a
region of the mouse X chromosome homologous to human Xq28
JOURNAL Genomics 11 (1), 154-164 (1991)
PUBMED 1684949
REFERENCE 7 (bases 1 to 6400)
AUTHORS Herman GE, Berry M, Munro E, Craig IW and Levy ER.
TITLE The construction of human somatic cell hybrids containing portions
of the mouse X chromosome and their use to generate DNA probes via
interspersed repetitive sequence polymerase chain reaction
JOURNAL Genomics 10 (4), 961-970 (1991)
PUBMED 1916827
REFERENCE 8 (bases 1 to 6400)
AUTHORS Herman GE, Faust CJ, Darlison MG and Barnard EA.
TITLE Genetic mapping of the mouse X chromosome in the region homologous
to human Xq27-Xq28
JOURNAL Genomics 9 (4), 670-677 (1991)
PUBMED 1674728
REFERENCE 9 (bases 1 to 6400)
AUTHORS Mitchell M, Simon D, Affara N, Ferguson-Smith M, Avner P and Bishop
C.
TITLE Localization of murine X and autosomal sequences homologous to the
human Y located testis-determining region
JOURNAL Genetics 121 (4), 803-809 (1989)
PUBMED 2721933
REFERENCE 10 (bases 1 to 6400)
AUTHORS Avner,P., Amar,L., Arnaud,D., Hanauer,A. and Cambrou,J.
TITLE Detailed ordering of markers localizing to the Xq26-Xqter region of
the human X chromosome by the use of an interspecific Mus spretus
mouse cross
JOURNAL Proc Natl Acad Sci U S A 84 (6), 1629-1633 (1987)
PUBMED 2882509
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
CJ130997.1, BC138003.1, BY010614.1, AL732461.23 and CF535607.1.
On May 16, 2009 this sequence version replaced NM_031494.1.
Transcript Variant: This variant (1) is the longer transcript and
encodes the longer isoform (1).
Sequence Note: This RefSeq record was created from transcript and
genomic sequence data to make the sequence consistent with the
reference genome assembly. The genomic coordinates used for the
transcript record were based on transcript alignments.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: SRR10223971.18673.1, BC138002.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN00849374, SAMN00849375
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on expression, longest protein
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-95 CJ130997.1 2-96
96-713 BC138003.1 1-618
714-720 BY010614.1 265-271
721-3937 BC138003.1 626-3842
3938-5984 AL732461.23 87284-89330
5985-6400 CF535607.1 1-416
FEATURES Location/Qualifiers
source 1..6400
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="X"
/map="X 37.29 cM"
gene 1..6400
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="zinc finger protein 275"
/db_xref="GeneID:27081"
/db_xref="MGI:MGI:1350985"
exon 1..132
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/inference="alignment:Splign:2.1.0"
exon 133..208
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/inference="alignment:Splign:2.1.0"
misc_feature 154..156
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="upstream in-frame stop codon"
CDS 181..1680
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="isoform 1 is encoded by transcript variant 1"
/codon_start=1
/product="zinc finger protein 275 isoform 1"
/protein_id="NP_113682.2"
/db_xref="CCDS:CCDS30199.2"
/db_xref="GeneID:27081"
/db_xref="MGI:MGI:1350985"
/translation="
MSHPCVSFLAPPAPQGLALPQDGAPGNQVLAVPLEMLEAQDLVSFDIVPWHLTEQEWLGLSLNPEQQALAYSRAVTSIGVPVVSPALVSHLSQGQVLLVSDPTLNTDHTKHPESTSATSHQKMGEEAQLQEMASTSSPRANDPSAEVKQNGDSGGRGGSPQNLPIEHHFACKECGDTFRLKVLLVQHQRVHSEEKGWECGDCRKVFRGVSEFNEHRNSHAAVAAQPRPGPSRALEDALEKREQMEREAKPFECEECGKRFKKNAGLSQHLRVHSREKPFDCEECGQSFKANTHLFRHQKLHTSEKPFACKACSRDFLDRQELLKHQRMHTGHLPFDCDDCGKSFRGVNGLAEHQRIHSGAKPYGCPHCGKLFRRSSELTKHRRIHTGEKPYECNQCGKAFRQSSSLLEHTRIHSGERPYACGDCGKAFRGPSDLIKHRRIHSGLKPYECDKCGKAFRRSSGLSRHRRIHSGVKRCECSECGRVFKRRSALQKHQPSHRE"
misc_feature 691..753
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275370"
misc_feature 775..837
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature <784..1002
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning]; Region: SFP1; COG5189"
/db_xref="CDD:227516"
misc_feature <928..1575
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 937..999
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1021..1083
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1105..1167
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1189..1251
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1273..1335
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(1288..1290,1294..1296,1300..1302,1306..1311,
1318..1323,1330..1332,1372..1374,1378..1380,1390..1395,
1402..1407,1414..1416,1456..1458,1462..1464,1468..1470,
1474..1479,1486..1491,1498..1500)
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 1357..1419
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1441..1503
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1525..1587
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 1609..1671
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
exon 209..300
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/inference="alignment:Splign:2.1.0"
exon 301..415
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/inference="alignment:Splign:2.1.0"
exon 416..517
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/inference="alignment:Splign:2.1.0"
exon 518..6377
/gene="Zfp275"
/gene_synonym="5430431L06Rik; DXBay20; DXHXS52; DXPas8"
/inference="alignment:Splign:2.1.0"
ORIGIN
ggaaacgcgctgccgggcttctgggctccgccaggcactggcggctccgtggcgcttcctgccacgccgggcctgcttacaacgcgcccgctcttcttctgcaagggcccagagtcaggcgccgtgggccgggtgagaccttccctacaggactaatctcttggaactgctctaaacaagatgagtcatccctgtgtgtcatttttagctccgcctgctccccaaggtcttgcccttccccaagacggagccccaggaaaccaggtcctggcagtccctcttgagatgctggaggcccaggatttggtgtcatttgatattgtaccgtggcacctcacagaacaggagtggctgggtctcagtttgaacccggagcagcaggcactggcatattccagggctgtgacctccattggagttcctgttgtgagtcctgctttggtatctcacctgtcacaaggacaagttctgttggtatctgatccaaccctcaacacagatcacactaagcaccctgaaagcacctctgcgacttcccaccagaagatgggtgaagaagcccagctgcaagagatggcgtccacgagttccccgagggccaatgaccccagcgctgaggtcaaacagaatggggactctgggggaaggggagggagcccacaaaatctgcccatagaacaccattttgcatgtaaagagtgtggggacaccttccgccttaaagtgctccttgttcagcaccagagggttcacagtgaggagaagggctgggagtgtggcgattgcaggaaggtcttcaggggggtgtcagaatttaatgagcacaggaacagccacgcagctgtggccgctcagccccggcctggccccagtcgggctctggaagatgccttggaaaagagggagcaaatggagagggaggcgaagccctttgagtgtgaggagtgcgggaaaaggtttaagaagaacgcaggccttagtcagcacctgagggtgcacagcagagagaagccctttgattgtgaggagtgtgggcagtccttcaaagccaacacccacctctttcgacatcagaagcttcacacttcggaaaagccctttgcgtgcaaggcgtgcagcagggatttcctggaccgccaggaacttctcaagcaccagcggatgcacacaggccacctgcccttcgactgcgatgactgcggcaagtccttccgtggtgtcaacggcctggcagagcaccagcgcatccacagcggcgccaaaccctacgggtgtcctcactgcggcaagctgttccggaggagctcagagctcaccaagcaccggaggatccacactggtgagaagccctatgagtgcaaccagtgcggcaaggccttccgccagagctccagcctgctggagcacacacgcatccatagcggtgagcggccttatgcatgcggcgactgcggtaaggccttccgagggccttctgacctcatcaagcacaggcgcatccacagcggactgaaaccctatgagtgcgacaagtgtggcaaggcctttaggaggagctcaggcctgagccgccaccgtcggatccacagtggggtcaagcgctgtgagtgcagtgagtgtggccgcgtgttcaagaggcgctcggcactgcagaaacaccagccctcccatcgcgagtaaacactgccctgggatccatagcaggtgtctgcagaggctatggctcagtcaaaggagatgaacagttctgtagcgcttatctactttattttgtgagaggttgaaatgatttatactgccaccagcaatttataaatatcaatgtttcccagtacatctattgagagtaacttttaccacttgaacatagattggctatttttccaggcaggaagtactatcaaggtatttcaatcttcacatctagaatgagaagaaaaatctgcaaatgggggggtctagtacagagctgggaggtccttgccaagctctatccctgagggaaatgtagtattgttcaatggcatcaatatgaaaggaaaattgccccaaggtgttagcctacttgaatttaattttagggatgtaaatagaatgctcaaatgccataatatttaatttattaatttagtaatgcatatgcattgtaaatcacattatatgaaataatatattaatttagagaataatccattttcaccatactccctttgtttccaaatactccatgtgcatttttgaccttactaacatgggagcctgtttgagtgatctgagctatggtagcactgtgacaatccctgtgtgaggctctcaccagaagtctcctcccaagccataacaacatattagtattattctttgtgtgtttttaaattagcactgtacctacagcatcaccacctaaagtggtgatttttcaaacatcactcctgggtcatactcctagtaaaacttactgggctggagataaacttttttcctttcattttgctaagccagttcagtccagtgacccctatgaacaccccaaacaaacatcagttggggtttttcctcacacagtatcattttattcaaaagaaagtgagagagcacccccaaatgaaagggacatcttcaggacataaaggtaaaatgacacctcctccttggaagatccttacaacactccctccatttgcagctttgacgtggggagtagtcacaatccctacctcctaagagtctcctaaggagtgtgccttgcatgtaaggatactacctggcaaggaagtgtatgtactcagtgaaggtcacttactggcatcccatagctcattagcaccagaaacagggacggacccctcaagcctcctgactgctagtctcatctttcatgcaatgactacaatagtatttcgggttccttgcatgcaaattatttgttcatctcctttgactagttatcaatttaccttggatatattgactttatatagtagttctttctatatcaattgtgatgttattttctaatttttattgctttgggttttttgtactttattacagttttgttgtgtaagttttagattttttttacatatccttgaattctttttttatgttaacctgtgactttaattgcttccatacttacatatgatgatgttttctttgagaatttatttacagaagaaaagttaaatcgactgcccaccaaaaaagtgaccatacaaggtgggcaggttggatgagagtgggccagagaagcatgcccaagccacatccaagatgcagactctctgtgggcagcacttgactatacaacctggccactgaggcacactagagacatgtctgtcacacattgctcagagcactctgtgactgctcatcattataagccccagccactagcaacagggctcagcttcacctataccaacagaatggtcccagtgtggcaacagctagccatccttcaagctgtcgggagccttgactattttggattcactggctgagcagcagctccatctaagaaacatctcagacacagaagattgacctgactggtaatgttatgtaaccttcattctcctcccaacaagtgactctggaatgagagaactttgtggtttctgctttgggcaactagattgagaaatttgcccatgtgttctggcatcacttcctaccgtcacatctaagaggggtgacatataggcctggagaaaaatggagctatgttcttccagtagcctgcacaccatgccacaaaagctggttgcaccaggtctggtctatgacttggagtagccatgcccaagagggcaataaaacaagatcagaggacaggaagccacctgacattcatgtggcacagaaattgaaactgatcacactgcagttgggccattgcttcaagcaagccccctcaggagaagaagcagcaggtgaagaaggtggccacatcagggctgtggcctgagtttccagttgtgccctgacagatgttgtagggccagaaaatgtgccattattgtcccctagttagggaggttgggctctctatggggcatagcctgaaagggctttcagccccatcctgggaagcaagatctaactgacagtgacctctgatcttggttagaagggcctctcgaaagccccaggccaccacagtggccctgtagaccttctctatgctggagagaagccaacaacagttgctacatagcaacttctgttgctctgtgggctcagttctggtggtttcttgtaaaccagtctgaacccacttctttctctaattacttttctcattgtgagctgttaggacatgctttttacagctattattgggtaaggaatgttaacatcaacaagggagcaaatatggcacctttaccttgaaagaatgccatttcttgctcagtcactcatcaattgtcaaggttgacaaaagatattattgaagtctagaataacactaacttggaaggtagcagtgtgagatgccacagatagggcgtggcatctcttcccatcccttcctaccctcttttactcttttctagtttgggttctgtaattttttttctctttaacaaaacctttttcagagttaacactaaaaatcggtgtcttttccatgactgttgtcagatcagcttttaaatggtgttggcagtgaaatccccactctctccaaatgcagtccgtgttgtggctttaacatgtggcccatagttgcatcctttgccttgggtaatgtgggggtggatttccttggatcctctaggtgtacttctatgtccaatgcaaacgtgagcaagcttcttgcagtgtgtgcttgtctatgcattcgtgtatctacctcattgcacttttctttctaaccacatgtattcttgcaagggatggagagcagctggattacctaatattctggctgtctatagagatctatccctttaccatattaagaaagaaatactctgtggcttttattagttttttaatacttgctgaagtttttaaaaagcaaatgtttaccattttgctgcttattatgattaactgtatcaatcggttgtatcatatccactcttggatttacagaacaatccccaccagatcaccagaaagatgggtgggcatttttctcccatgatattgcattctgtgtgcttgattttgtgcttgaagtggcatgacacctgccctgcctgcagtcctaggctgtggccctgttgtatgccacgtgacttgccacctcacttctggaccacactaattaagccaaccccagacacctgacccaaaggcagcaacaagcagtcagacctgattgaagaagatggacttggccttttagggctatgaaaagcaaaagaggaaactgatgtatctagttggtattggaggcatggagggacgcacaaggtatttcaaggagttgctcctggaagtagaaccaaagagatcttgctggcctgcccagagctgcttgggtcctaccatagcaggcctggctgtatgttcttggattgctggcagctgtcttcatcagtctatgtgtgtccccagcatagacgcctcccctcccctgcaatgccgttagccaacttgaatgaaccttgtgcttttttttttttaatttgtcaagagccaattgcatttgacagttgggctgcttcccgagaagattctcattgctggcttttctcacattctacccatccagaattcctggcctaaatccagttgattgacatgaacacctatttaaatgtggtactgtactctgttcactaagatgggtataaatctatgccttttaatttctgggtttaacccatgatctgtatgagtgtagttccttttctgaacagcatttgactcataacacgagctcattatagcccattttattctatttttggaagtgttttactattttcagcaaacccgctagattaggggattggtgacacctctattcctagtgtacttacattctgtagttcacattacgttgatttgagtactttcaaaaatagaagtggtatatttgaacatgatcctcagtgctacttgcgtatctctgagaatagtagttgtgtcctgcccagtttgtattcagttttagaggcattcttgttcttccctagtctgattctcttgttgttttatggcactcactataatcagccttgcactagagttgtttgtggacttggcttctcctccccttttttcagccttccccaacctattagattgtgagctcttagaagacaggggtggccctttatgtctaatcccctaccaaatctagcacagtgccttgcatctagtagattttaataaatatatgttaaatggcaaaaaaaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]