2024-09-29 11:19:52, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_028426 3317 bp mRNA linear ROD 05-AUG-2023 DEFINITION Mus musculus claudin 34C1 (Cldn34c1), transcript variant 1, mRNA. ACCESSION NM_028426 XM_888743 XM_912053 VERSION NM_028426.2 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3317) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK032219.1, BC027572.1 and BY582041.1. On Jul 17, 2015 this sequence version replaced NM_028426.1. Transcript Variant: This variant (1) represents the longest transcript and encodes the isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK014019.1, BC027572.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164131, SAMN01164132 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-36 AK032219.1 1-36 37-956 BC027572.1 1-920 957-3314 AK032219.1 916-3273 3315-3317 BY582041.1 405-407 FEATURES Location/Qualifiers source 1..3317 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="X" /map="X 49.81 cM" gene 1..3317 /gene="Cldn34c1" /gene_synonym="3110007F17Rik" /note="claudin 34C1" /db_xref="GeneID:73061" /db_xref="MGI:MGI:1920311" exon 1..115 /gene="Cldn34c1" /gene_synonym="3110007F17Rik" /inference="alignment:Splign:2.1.0" exon 116..231 /gene="Cldn34c1" /gene_synonym="3110007F17Rik" /inference="alignment:Splign:2.1.0" misc_feature 205..207 /gene="Cldn34c1" /gene_synonym="3110007F17Rik" /note="upstream in-frame stop codon" CDS 229..933 /gene="Cldn34c1" /gene_synonym="3110007F17Rik" /note="isoform 1 is encoded by transcript variant 1" /codon_start=1 /product="claudin 34C1 isoform 1" /protein_id="NP_082702.1" /db_xref="CCDS:CCDS53178.1" /db_xref="GeneID:73061" /db_xref="MGI:MGI:1920311" /translation="
MFISKRAARNRTLAGFHIFDASMVLLNKSANHQIRGFTLATIACIMCNTSMALPEWRICYLNNSMLSYPSLAFVNIWEAYICHHNHNSSHLRDCHYYTCHNNLVPLDIRVSQILLQVANVVGLVGTVCSVFALQQLYTEELHKNNDYNPFVLSAVLNAIASTFIFLAVMCNHLSVPSKEEVSFLQSFQMPIFSNAQRAGRAMGLAYISAILFLLSAIIFISYCPSMEIKMFPRV"
exon 232..272 /gene="Cldn34c1" /gene_synonym="3110007F17Rik" /inference="alignment:Splign:2.1.0" exon 273..3317 /gene="Cldn34c1" /gene_synonym="3110007F17Rik" /inference="alignment:Splign:2.1.0" ORIGIN
gaatgggcgagcggtcgcgccgttgggaggagcagtccggacccatgcccgtgcaggcaggacatggggagagcacgcagcgacaggcatctggctttctgagccctgggatttgaatggaatactacacagctactaaaaacaaggacatcttgaaatttgcagtcagatgcatggaacgagaaaaggtcatcctgagtgatgtaaaccagatccagaaatacaaacatgtttatcagcaagagagctgcaagaaataggacccttgctggtttccacatatttgatgccagcatggtcctgctaaacaagtctgccaatcaccaaataagaggtttcactttagctacaatagcatgcataatgtgcaatacctctatggcccttccagaatggcgaatttgctacttgaacaactccatgctttcctacccaagtctggcttttgtgaatatttgggaggcctacatctgccaccacaaccacaactcaagccacctgagagattgccattactacacctgccataacaaccttgttcctttggatatccgggtatctcaaattctgctccaggttgcaaatgttgttggtctggttgggacagtttgttctgtctttgctctacagcagttatacacagaggaactgcataagaataatgactacaatccatttgttctttcagctgtcctcaatgctattgctagcacctttatttttcttgctgttatgtgtaatcacctctccgtgcccagcaaggaagaggtatctttcctgcaatctttccaaatgccaattttttccaatgctcaaagagcaggcagagccatgggattggcatacatatctgccatattgtttttattaagtgctataatttttatttcttactgtccttcaatggaaatcaaaatgtttccccgtgtctgaaaataaatttgcagcatacataaccttgaaaatcaaaatgtcttggcaatggttttggggacctagactgagatgtaatgggagatatttttaaaatattaacttagattttctaaggacataaagccctaccctatgtatcctatgacagaaaatggcaaaatgacatcaagcattctttcctatttggtttattacttctttggttgaattttttggtttagttttttttcatgtttttgtttatttgtttgttttgatttttgttcatttttatcattccaacttgccaattttgttttatagaatctaaattttaaatattgtttgtcaaggtaaataatcaataaatatagttgtattagtcatggatctctaaaggacagaacatatagaatccatctctcacatacaactttattctctctctctcactctttcccttcctctcccttctccccttctctctctctctctctctctctctctctctctctctctctctctctctctctcttcagattgcaaagggagatttccttgtctggctacattatttcttttaaagtttaagaattatccactatgttcatagcaaccttatttataatagctataagctggaacgaacccagatgtccctcaagaaaggaatggatacagaaaatatggtacatttacacaatggagtactactcagcaattaaaaacagtgaatttatgaaattcttaggcaaatggatagatttggaggatatcatcctaaatgaggtaacccaatcacaaaaggaaacacatgatatgtactcactgataagtggatattagcccagaaacttagaatacacaagacacaatttgcaaaacacatgagtctcaagaagaaggaagagcaaagtgtggatacatcctttcttcttaaaatggggaacaaaataccaatggaaggagttacaaaggcaaagttcggaacagatcctgaaggaacaaccatccagagactgccctacctggggatacaccccataaacaactaccaaacacagtcactaggtagatgccaataagaggctgctgagaggagcctcatatagctgtctcttgtgaggctctgctagtgcctggcaaatacagaagtggatgctcacaattatccattggacagagcacatgggtcccaatgaaggagccagagaaatactcattgagctggaggggtctgaagccctataggtggaacatcaatatgaactaatcagtacccccaagctccttggaaccataccaacaatcaaagaaaacatatggttgaacttgtggctctagctatatatgtagcagatgatggcctaatcagtcatcaaaggaaggagaggcccttggtcttgggaaggctctatgccccagtacaggggaatgccaggagtaggaatcagagtgggtgggttggggagtagggggattggggagggaataggggatttttggaggggaaactaagaaaggggctaacatttgaaatgtaaataaagaaaatatctaaaaagaaagaattattcatttaaaattaaattcccggaaatgttattaccccagaaaatatcatttaattttatttgcatctaatttgcacaatctgcctcttaggattataattcacacttgtacacatcatacacacaaacacaaacacacaccacacacatttgtgtagtgtccccatctgcctattacccatgacattttaataattttggtttgctgaacaaatttaatcaatgtcttctcagttaactaactctggttgagctctttagaaaatgtactttctgggtgatgccatgttctttgtactgaatgttaatatataggtgtcttatagtacctgcctcttactgatacaaggtttgatacaattgttggtagatccttgaggagaagacttaatttcacttaagctgaatggtttccccaactaaaagtttcatctccatgtggtccctgtttgtagcaatggaatattagcattccatgaggtcattggttgatgtgtttctaattagcagaaaggattttagagagtttgaactactatgtctatttgctcactctgaattcttatgtatatcaagaagttggagtaactgcttcattcttcccctctactttcaataatttataaaagaatttgaaggtattatttagattttgtttgtactttttggtttttgaatattgaagtagttggtgttgtttcatgagttaactttcgtccatttttacgtatgtaaataatcaagatcttgaggtgtatttacagagagcagtgattattccactgtgtttcatttcaagcacttaataaatgaacaaacaaatgctaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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