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Previous release (v1)
2025-12-08 04:08:15, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS NM_025652 1315 bp mRNA linear ROD 27-APR-2025
DEFINITION Mus musculus general transcription factor III A (Gtf3a), mRNA.
ACCESSION NM_025652
VERSION NM_025652.3
KEYWORDS RefSeq; RefSeq Select.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1315)
AUTHORS Wiese,C.B., Ireland,S., Fleming,N.L., Yu,J., Valerius,M.T.,
Georgas,K., Chiu,H.S., Brennan,J., Armstrong,J., Little,M.H.,
McMahon,A.P. and Southard-Smith,E.M.
TITLE A genome-wide screen to identify transcription factors expressed in
pelvic Ganglia of the lower urinary tract
JOURNAL Front Neurosci 6, 130 (2012)
PUBMED 22988430
REMARK Publication Status: Online-Only
REFERENCE 2 (bases 1 to 1315)
AUTHORS Guo,G., Huss,M., Tong,G.Q., Wang,C., Li Sun,L., Clarke,N.D. and
Robson,P.
TITLE Resolution of cell fate decisions revealed by single-cell gene
expression analysis from zygote to blastocyst
JOURNAL Dev Cell 18 (4), 675-685 (2010)
PUBMED 20412781
REFERENCE 3 (bases 1 to 1315)
AUTHORS Hanas,J.S., Hocker,J.R., Cheng,Y.G., Lerner,M.R., Brackett,D.J.,
Lightfoot,S.A., Hanas,R.J., Madhusudhan,K.T. and Moreland,R.J.
TITLE cDNA cloning, DNA binding, and evolution of mammalian transcription
factor IIIA
JOURNAL Gene 282 (1-2), 43-52 (2002)
PUBMED 11814676
REFERENCE 4 (bases 1 to 1315)
AUTHORS Moorefield,B. and Roeder,R.G.
TITLE Purification and characterization of human transcription factor
IIIA
JOURNAL J Biol Chem 269 (33), 20857-20865 (1994)
PUBMED 8063702
REFERENCE 5 (bases 1 to 1315)
AUTHORS Kozak,M.
TITLE Downstream secondary structure facilitates recognition of initiator
codons by eukaryotic ribosomes
JOURNAL Proc Natl Acad Sci U S A 87 (21), 8301-8305 (1990)
PUBMED 2236042
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from BE656279.1, AF391799.1,
AC124828.14 and BI202484.1.
On Feb 8, 2008 this sequence version replaced NM_025652.2.
Summary: The product of this gene is a zinc finger protein with
nine Cis[2]-His[2] zinc finger domains. It functions as an RNA
polymerase III transcription factor to induce transcription of the
5S rRNA genes. The protein binds to a 50 bp internal promoter in
the 5S genes called the internal control region (ICR), and
nucleates formation of a stable preinitiation complex. This complex
recruits the TFIIIC and TFIIIB transcription factors and RNA
polymerase III to form the complete transcription complex. The
protein is thought to be translated using a non-AUG translation
initiation site in mammals based on sequence analysis, protein
homology, and the size of the purified protein. [provided by
RefSeq, Jul 2008].
##Evidence-Data-START##
Transcript exon combination :: AF391799.1, AK008247.2 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN00849374, SAMN00849375
[ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
non-AUG initiation codon :: inferred from conservation
RefSeq Select criteria :: based on single protein-coding
transcript
##RefSeq-Attributes-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-26 BE656279.1 1-26
27-514 AF391799.1 11-498
515-515 AC124828.14 180354-180354
516-1291 AF391799.1 500-1275
1292-1315 BI202484.1 1-24 c
FEATURES Location/Qualifiers
source 1..1315
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="5"
/map="5 86.57 cM"
gene 1..1315
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="general transcription factor III A"
/db_xref="GeneID:66596"
/db_xref="MGI:MGI:1913846"
exon 1..319
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/inference="alignment:Splign:2.1.0"
misc_feature 11..13
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="upstream in-frame stop codon"
CDS 125..1219
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="non-AUG (CUG) translation initiation codon; TFIIIA;
factor A"
/codon_start=1
/product="transcription factor IIIA"
/protein_id="NP_079928.2"
/db_xref="CCDS:CCDS19873.2"
/db_xref="GeneID:66596"
/db_xref="MGI:MGI:1913846"
/translation="
MEPRVSVAEAVSSLTIADAFVGACEGPAPPRPALPSRFICSFPDCSASYNKAWKLDAHLCKHTGERPFVCDYEGCGKAFIRDYHLSRHVLIHTGEKPFVCADDGCNQKFNTKSNLKKHIERKHGNPQKQYVCSYEGCKKAFKKHQQLRTHQCQHTSEPLFRCTHEGCGKHFASPSRLKRHGKVHEGYLCQKGCSFMGKTWTELLKHMREAHKEDITCNVCQRMFKRRDYLKQHMKTHAPERDVYRCPRQGCGRTYTTVFNLQSHILSFHEEKRPFVCEHAGCGKTFAMKQSLMRHSVVHDPDKKRMKLKVRAPRERRSLASRLSGYFPPKRKQEPDYSLPNASAESSSSPEAQLPPPAALLTVC"
misc_feature 242..310
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="Region: zinc finger"
misc_feature 251..310
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(263..265,269..271,275..277,281..286,293..298,
305..307,353..355,359..361,371..376,383..388,395..397,
443..445,449..451,455..457,461..466,473..478,488..490)
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature <308..679
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:227381"
misc_feature 332..400
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="Region: zinc finger"
misc_feature 332..400
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 422..493
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="Region: zinc finger"
misc_feature 422..493
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 518..586
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="Region: zinc finger"
misc_feature 527..586
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 608..676
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="Region: zinc finger"
misc_feature 608..676
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 689..757
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="Region: zinc finger"
misc_feature 773..835
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="Region: zinc finger"
misc_feature 773..835
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature order(788..790,794..796,800..802,806..811,818..823,
830..832,881..883,887..889,899..904,911..916,923..925,
974..976,980..982,986..988,992..997,1004..1009,1016..1018)
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="putative nucleic acid binding site [nucleotide
binding]; other site"
/db_xref="CDD:275368"
misc_feature 860..931
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="Region: zinc finger"
misc_feature 860..931
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
misc_feature 953..1021
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="Region: zinc finger"
misc_feature 953..1021
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
finger"
/db_xref="CDD:275368"
exon 320..420
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/inference="alignment:Splign:2.1.0"
exon 421..517
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/inference="alignment:Splign:2.1.0"
exon 518..606
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/inference="alignment:Splign:2.1.0"
exon 607..680
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/inference="alignment:Splign:2.1.0"
exon 681..761
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/inference="alignment:Splign:2.1.0"
exon 762..991
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/inference="alignment:Splign:2.1.0"
exon 992..1051
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/inference="alignment:Splign:2.1.0"
exon 1052..1298
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/inference="alignment:Splign:2.1.0"
regulatory 1271..1276
/regulatory_class="polyA_signal_sequence"
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="hexamer: ATTAAA"
polyA_site 1291
/gene="Gtf3a"
/gene_synonym="2010015D03Rik; 2610111I01Rik;
5330403M05Rik"
/note="major polyA site"
ORIGIN
cctggagccttagcgggccgcgttcccggaagttcaaagtctccgggcgccagtggcttgcgtcccgcgttcccggggacggcacgtggctgccccgcgtcagcccgggcccgatcgtgtcgccctggagccgcgggtgtcagtcgcggaagcggtgtcgtcgctgaccatcgcggatgcgttcgtcggggcctgtgagggccccgcgccgccgcgccccgcgctgcccagcaggttcatctgctcctttcccgactgcagcgccagttacaacaaagcctggaagctagacgcgcacctatgcaaacacacgggggagaggccatttgtttgcgactatgagggctgtggcaaggccttcatcagagactaccatctgagccggcatgtcctgattcacaccggggaaaagccgtttgtttgtgcagatgatggctgtaatcagaaattcaacacaaaatcaaacttgaagaaacacattgaacgcaaacatggaaacccacaaaaacagtatgtgtgcagttatgagggttgcaagaaggcctttaagaagcaccagcagctgagaacccatcagtgccagcacaccagcgagccgctcttcaggtgtacccacgagggatgcgggaagcactttgcctcgcccagcaggctgaaacggcatgggaaagttcacgagggctacctgtgtcaaaagggatgttctttcatgggaaaaacgtggacagagctcctgaaacacatgagagaagcccataaagaggacataacctgcaatgtatgtcagaggatgttcaagcgcagagattaccttaagcagcacatgaagactcacgccccggaaagggatgtgtaccgctgtccgcggcaaggctgcggaagaacctacacaaccgtgttcaacctgcagagccacattctctccttccacgaggaaaagcgcccatttgtgtgtgagcacgctggctgtggcaagacattcgcaatgaaacagagtctcatgaggcacagtgtcgtgcacgatcccgacaagaagaggatgaagctcaaagtaagagcccctcgggagagacgcagcttggcctctcgcctcagtgggtacttccctcctaagaggaaacaagagcccgactactccttgcctaacgccagcgcagagtccagcagcagcccagaggcccagctgcccccgccagccgccttactcactgtctgctaggcgggaagacttcagggcggccagcagaggctcctggcctgcacttttcctattaaagtcactgacacacaacatccgaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]