LOCUS       NM_001418904            3164 bp    mRNA    linear   ROD 31-OCT-2023
DEFINITION  Mus musculus PHD finger protein 20-like 1 (Phf20l1), transcript
            variant 19, mRNA.
ACCESSION   NM_001418904 XM_006520926
VERSION     NM_001418904.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3164)
  AUTHORS   Kumar S, Alam SS, Bareke E, Beauchamp MC, Dong Y, Chan W, Majewski
            J and Jerome-Majewska LA.
  TITLE     Sf3b4 regulates chromatin remodeler splicing and Hox expression
  JOURNAL   Differentiation 131, 59-73 (2023)
   PUBMED   37167859
REFERENCE   2  (bases 1 to 3164)
  AUTHORS   Bedogni F and Hevner RF.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3164)
  AUTHORS   Guo G, Huss M, Tong GQ, Wang C, Li Sun L, Clarke ND and Robson P.
  TITLE     Resolution of cell fate decisions revealed by single-cell gene
            expression analysis from zygote to blastocyst
  JOURNAL   Dev Cell 18 (4), 675-685 (2010)
   PUBMED   20412781
REFERENCE   4  (bases 1 to 3164)
  AUTHORS   Bulfone A, Carotenuto P, Faedo A, Aglio V, Garzia L, Bello AM,
            Basile A, Andre A, Cocchia M, Guardiola O, Ballabio A, Rubenstein
            JL and Zollo M.
  TITLE     Telencephalic embryonic subtractive sequences: a unique collection
            of neurodevelopmental genes
  JOURNAL   J Neurosci 25 (33), 7586-7600 (2005)
   PUBMED   16107646
REFERENCE   5  (bases 1 to 3164)
  AUTHORS   Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng
            EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC,
            Babbitt PC and Ferrin TE.
  TITLE     BayGenomics: a resource of insertional mutations in mouse embryonic
            stem cells
  JOURNAL   Nucleic Acids Res 31 (1), 278-281 (2003)
   PUBMED   12520002
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC163443.6.
            
            On Mar 24, 2023 this sequence version replaced XM_006520926.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR7652917.907150.1,
                                           SRR14777535.1784904.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849375, SAMN00849381
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-267               AC163443.6         108555-108821       c
            268-387             AC163443.6         106214-106333       c
            388-559             AC163443.6         91424-91595         c
            560-644             AC163443.6         91203-91287         c
            645-733             AC163443.6         88955-89043         c
            734-947             AC163443.6         82162-82375         c
            948-1073            AC163443.6         81497-81622         c
            1074-3164           AC163443.6         74786-76876         c
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="15"
                     /map="15 29.3 cM"
     gene            1..3164
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /note="PHD finger protein 20-like 1"
                     /db_xref="GeneID:239510"
                     /db_xref="MGI:MGI:2444412"
     exon            1..267
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            268..387
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    293..295
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /note="upstream in-frame stop codon"
     CDS             305..1162
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /note="isoform 13 is encoded by transcript variant 19; PHD
                     finger protein 20-like protein 1; tudor domain-containing
                     protein PHF20L1"
                     /codon_start=1
                     /product="PHD finger protein 20-like protein 1 isoform 13"
                     /protein_id="NP_001405833.1"
                     /db_xref="GeneID:239510"
                     /db_xref="MGI:MGI:2444412"
                     /translation="

MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLERPALRKEGLKDEEELFDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQDWIALVKAAAAAAAKNKTGTKPRASANSNKEKERDGGKWFKLPSKKAETSTCIVTAEIEKKEELPTSSETFGLHIDTVPKIVFPQPESTLTNKRKNNQGNSFQAKRARLNKITGLLASKAVGVDGAERKEDCSATAPVLEQV"

     misc_feature    341..520
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /note="malignant brain tumor (MBT) repeat found in PHD
                     finger protein 20-like protein 1 (PHF20L1) and similar
                     domains; Region: MBT_PHF20L1-like; cd20104"
                     /db_xref="CDD:439094"
     misc_feature    order(371..373,380..385,389..391,443..445,452..454,
                     464..466)
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /note="putative methyllysine peptide binding site
                     [polypeptide binding]; other site"
                     /db_xref="CDD:439094"
     misc_feature    560..736
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /note="Tudor domain found in PHD finger protein 20-like
                     protein 1 (PHF20L1) and similar proteins; Region:
                     Tudor_PHF20L1; cd20454"
                     /db_xref="CDD:410525"
     exon            388..559
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            560..644
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            645..733
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            734..947
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            948..1073
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            1074..3164
                     /gene="Phf20l1"
                     /gene_synonym="CGI-72; E130113K22Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agggctggccggcggcggtggtggctgcggaggcggcagcggcggcagcgacggcggctgcgatggtagcggagccggagtgggcttgagggcttcctcccgcgtttcctcgggccgacgcggcgccgcgggcccggctcactcggctcccgctccctcccttgctgctgcccgggcagactcgaacgaggcccgcgctggcctccctgacgcgccccggctcggccccggacggcccggctgctgtgcggagacgaggccgagtcggtagtggaaagaaaatactgaagaataggatctcaagatgagtaaaaagcccccaaatcgtcctggaatcacttttgagattggtgctcgtttggaggcactggactacttacagaaatggtatccatcccgaattgaaaaaattgattatgaagaagggaagatgctagtccattttgagcgctggagtcatcgatatgatgagtggatttactgggacagcaacaggttgcgaccccttgagagacctgcactaaggaaagaagggctaaaggatgaggaagagctctttgattttaaagctggagaagaagtactggctcgttggacagactgtcgctattaccctgccaagattgaagcaattaacaaagaaggaacattcacagttcagttttatgatggcgtaatccgttgtttaaaaagaatgcacattaaagccatgcctgaggatgctaaggggcaggactggattgctttagtcaaagcagctgctgcagctgcagcgaaaaataaaacagggactaaacctcgagccagtgctaacagcaataaagagaaagagagagatgggggaaaatggttcaaattaccttcaaagaaggcagagacttcaacgtgcatagtcacagcagagattgagaagaaggaggaactacccacatccagtgaaacatttggacttcacatagacaccgttccaaagatcgtctttccacagccagagagcacattaacaaacaagaggaaaaataatcaaggcaactcatttcaggcaaagagagcccgacttaacaagatcactggtttgttggcatccaaagctgttggggtggatggtgctgaaagaaaagaagactgcagtgcaacagctccagtcctggagcaggtatgaaatggtagcatttgcttgtttcaaggtcccactggaaggtcactcacggagctgtagtactacgtgattgcagttgccctctgatcagatatggggatagagcactgactcattgatgagacacttttaactctgccttctcccgaatatgcacataagctatggactgtattagcttatgttctccatagactgaaatgaaagccattgtctccacaattagaaggcctggagacaggcatcccagggtatgagcttccagctggacacctttagctttcaaaaagacccttacacaaatacttttcatttgtggatttaatcagggttttttgacatccaattaaacttcttttataagaagtttcttttatattgtaacagttggtgttcttagactgtgttttatgaattgatcaatgagccatacatttttgctaggatgtatattttaataactacaataaaaaagagaatttaaaaaacttttaagggtctgtcttaaaccacctaatagagaaatttaaaaccgcaggttgcagttgctagaactggccttggctatgttcacgtacccacaatacctgtacatactgagctgtgcatgcttttccatcctctaagggcttaactgcttaggcactgtatgaatacagtaatagccataactgaatttctttggttctcctgttttaaaatctgagccttaatgtagtttcaataaatccattttgtattatcttaattttctttattagtagactaataagactttaaaatgagtaccttttgctcttctctatatgtgttttaaaggataacccaaatttaattgatattgtattgagtttttcagtgttgattcaggcctgatttgaaagcagtgcattgttttgatacctccattaatgttgtattaaatgaatggtcttttaaattgagatcaatatgtcagtgactcataccttccagttttctgtgagcatcaaacggttaagtctttgccgttattgtcagtatatcaaccaaattttaaataacttttttactgtgtatgactatatttaacgtcccagatataacaatattttgtacccctacaattgttacaatatactcagaatgcgatatatcagggacttgggtaataaaatatttctggaaaattcattacaatgtcaatctttcattacacataatctgtgaggtacatgtgattgtgaaaagtacttactacatgtggaaagatagtttagaattgagtaaccagttcagagaaacagttttaaaaagaaaggaaagtagagcaactcggctatttgtacttgcataattcaaaacttttcaaagtccttgccagttttgtaacagagaccaataatcattaattgaacctttgtaaatgttctagagtttaaggaacatcacgctgttccctcttttattttgtcattcaggttgacttcaatgtgaaaatgttttgtaaccagacttaatttttatggtatttgttagccttgcttctaagctaaaaagccgagttagaaagctcttaactatctcagttggtatcagcaagagacctaaatgagaaattttgattgttgctaacttctgttgtcctaaggagttacaatgccagttatgacatattgataacaggcctacagccacaatttgatgtactaatgaatttatatttctgaaagattcaaactgtggttttgaaccccattatcagattattagttatagattacttaattgtattagggaaatgtcatgttatatttacttttggataaaacttgcatttgatgcataataattcactaaggttaaaatatgttaatttgtccttgtttagaagttaagcaccttaccaagttattaatttaagttttaaaatcttgttttataactttgtaactcaagagtaatggatgctgtagtgatgtctctcacatatgtgaagatgaacaataaaattgtttatttacaa

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