2024-07-05 18:36:02, GGRNA.v2 : RefSeq release 224 (May, 2024)
LOCUS NM_001411829 9971 bp mRNA linear ROD 02-MAY-2024 DEFINITION Mus musculus dicer 1, ribonuclease type III (Dicer1), transcript variant 1, mRNA. ACCESSION NM_001411829 VERSION NM_001411829.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 9971) AUTHORS Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A., Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R., Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J., Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z., Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J., Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L., Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J., Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B., Jackson,S.P. and Balmus,G. CONSRTM Sanger Mouse Genetics Project TITLE Genetic determinants of micronucleus formation in vivo JOURNAL Nature 627 (8002), 130-136 (2024) PUBMED 38355793 REFERENCE 2 (bases 1 to 9971) AUTHORS Kompotis,K., Mang,G.M., Hubbard,J., Jimenez,S., Emmenegger,Y., Polysopoulos,C., Hor,C.N., Wigger,L., Hebert,S.S., Mongrain,V. and Franken,P. TITLE Cortical miR-709 links glutamatergic signaling to NREM sleep EEG slow waves in an activity-dependent manner JOURNAL Proc Natl Acad Sci U S A 121 (3), e2220532121 (2024) PUBMED 38207077 REFERENCE 3 (bases 1 to 9971) AUTHORS Oikawa,S., Yuan,S., Kato,Y. and Akimoto,T. TITLE Skeletal muscle-enriched miRNAs are highly unstable in vivo and may be regulated in a Dicer-independent manner JOURNAL FEBS J 290 (24), 5692-5703 (2023) PUBMED 37525425 REMARK GeneRIF: Skeletal muscle-enriched miRNAs are highly unstable in vivo and may be regulated in a Dicer-independent manner. REFERENCE 4 (bases 1 to 9971) AUTHORS Wang,Y., Chen,S.Y., Ta,M., Senz,J., Tao,L.V., Thornton,S., Tamvada,N., Yang,W., Moscovitz,Y., Li,E., Guo,J., Shen,C., Douglas,J.M., Ei-Naggar,A.M., Kommoss,F.K.F., Underhill,T.M., Singh,N., Gilks,C.B., Morin,G.B. and Huntsman,D.G. TITLE Biallelic Dicer1 Mutations in the Gynecologic Tract of Mice Drive Lineage-Specific Development of DICER1 Syndrome-Associated Cancer JOURNAL Cancer Res 83 (21), 3517-3528 (2023) PUBMED 37494476 REMARK GeneRIF: Biallelic Dicer1 Mutations in the Gynecologic Tract of Mice Drive Lineage-Specific Development of DICER1 Syndrome-Associated Cancer. REFERENCE 5 (bases 1 to 9971) AUTHORS Reyes-Castro,R.A., Chen,S.Y., Seemann,J., Kundu,S.T., Gibbons,D.L. and Arur,S. TITLE Phosphorylated nuclear DICER1 promotes open chromatin state and lineage plasticity of AT2 tumor cells in lung adenocarcinomas JOURNAL Sci Adv 9 (30), eadf6210 (2023) PUBMED 37494452 REMARK GeneRIF: Phosphorylated nuclear DICER1 promotes open chromatin state and lineage plasticity of AT2 tumor cells in lung adenocarcinomas. REFERENCE 6 (bases 1 to 9971) AUTHORS Bernstein,E., Kim,S.Y., Carmell,M.A., Murchison,E.P., Alcorn,H., Li,M.Z., Mills,A.A., Elledge,S.J., Anderson,K.V. and Hannon,G.J. TITLE Dicer is essential for mouse development JOURNAL Nat Genet 35 (3), 215-217 (2003) PUBMED 14528307 REMARK GeneRIF: role in lethality early in development Erratum:[Nat Genet. 2003 Nov;35(3):287] REFERENCE 7 (bases 1 to 9971) AUTHORS Doi,N., Zenno,S., Ueda,R., Ohki-Hamazaki,H., Ui-Tei,K. and Saigo,K. TITLE Short-interfering-RNA-mediated gene silencing in mammalian cells requires Dicer and eIF2C translation initiation factors JOURNAL Curr Biol 13 (1), 41-46 (2003) PUBMED 12526743 REFERENCE 8 (bases 1 to 9971) AUTHORS Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A., Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L., Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E. TITLE BayGenomics: a resource of insertional mutations in mouse embryonic stem cells JOURNAL Nucleic Acids Res 31 (1), 278-281 (2003) PUBMED 12520002 REFERENCE 9 (bases 1 to 9971) AUTHORS Nicholson,R.H. and Nicholson,A.W. TITLE Molecular characterization of a mouse cDNA encoding Dicer, a ribonuclease III ortholog involved in RNA interference JOURNAL Mamm Genome 13 (2), 67-73 (2002) PUBMED 11889553 REFERENCE 10 (bases 1 to 9971) AUTHORS Araki,K., Imaizumi,T., Sekimoto,T., Yoshinobu,K., Yoshimuta,J., Akizuki,M., Miura,K., Araki,M. and Yamamura,K. TITLE Exchangeable gene trap using the Cre/mutated lox system JOURNAL Cell Mol Biol (Noisy-le-grand) 45 (5), 737-750 (1999) PUBMED 10512203 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC124364.4 and AF430845.1. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: AF430845.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMN00849374, SAMN00849375 [ECO:0006172] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on conservation, expression, longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-325 AC124364.4 149768-150092 c 326-390 AF430845.1 215-279 391-513 AC124364.4 129820-129942 c 514-676 AC124364.4 129040-129202 c 677-807 AC124364.4 128153-128283 c 808-942 AC124364.4 127148-127282 c 943-1103 AC124364.4 126353-126513 c 1104-1272 AC124364.4 121922-122090 c 1273-1745 AC124364.4 119991-120463 c 1746-1878 AC124364.4 112794-112926 c 1879-2121 AC124364.4 111015-111257 c 2122-2276 AC124364.4 110201-110355 c 2277-2409 AC124364.4 108645-108777 c 2410-2485 AC124364.4 107805-107880 c 2486-2625 AC124364.4 106796-106935 c 2626-2805 AC124364.4 104873-105052 c 2806-3019 AC124364.4 104571-104784 c 3020-3173 AC124364.4 104233-104386 c 3174-3356 AC124364.4 103073-103255 c 3357-3462 AC124364.4 102739-102844 c 3463-3638 AC124364.4 102086-102261 c 3639-4419 AC124364.4 100422-101202 c 4420-4575 AC124364.4 98385-98540 c 4576-5446 AC124364.4 94294-95164 c 5447-5715 AC124364.4 92498-92766 c 5716-5878 AC124364.4 90323-90485 c 5879-5954 AC124364.4 90147-90222 c 5955-9971 AC124364.4 85762-89778 c FEATURES Location/Qualifiers source 1..9971 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="12" /map="12 54.83 cM" gene 1..9971 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="dicer 1, ribonuclease type III" /db_xref="GeneID:192119" /db_xref="MGI:MGI:2177178" exon 1..325 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 326..513 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" misc_feature 367..369 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="upstream in-frame stop codon" CDS 370..6120 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /EC_number="3.1.26.3" /note="isoform 1 is encoded by transcript variant 1; endoribonuclease Dicer; double-strand-specific ribonuclease mDCR-1; Dicer1, Dcr-1 homolog" /codon_start=1 /product="endoribonuclease Dicer isoform 1" /protein_id="NP_001398758.1" /db_xref="GeneID:192119" /db_xref="MGI:MGI:2177178" /translation="
MKSPALQPLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHAKRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSDLEVNASWTKERWSQEFTKHQVLIMTCYVALTVLKNGYLSLSDINLLVFDECHLAILDHPYREIMKLCESCPSCPRILGLTASILNGKCDPEELEEKIQKLERILRSDAETATDLVVLDRYTSQPCEIVVDCGPFTDRSGLYERLLMELEAALDFINDCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTLLRKIHALCEEYFSPASLDLKYVTPKVMKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFRKQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISNYVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPPYVLRPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGTFYSTLYLPINSPLRASIVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKPALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWKKSIDSKSFISSCNSSLAESDNYCKHSTTVVPEHAAHQGATRPSLENHDQMSVNCKRLPAESPAKLQSEVSTDLTAINGLSYNKNLANGSYDLVNRDFCQGNQLNYFKQEIPVQPTTSYPIQNLYNYENQPKPSNECPLLSNTYLDGNANTSTSDGSPAVSTMPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSNSEKWEKDEMTKDCLLANGKLGEACEEEEDLTWRAPKEEAEDEDDFLEYDQEHIQFIDSMLMGSGAFVRKISLSPFSASDSAYEWKMPKKASLGSMPFASGLEDFDYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDTGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTSREKALDPAQENGSSQQKSLSGSCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPNS"
misc_feature 493..1086 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="DEXH-box helicase domain of endoribonuclease Dicer; Region: DEXHc_dicer; cd18034" /db_xref="CDD:350792" misc_feature order(493..504,511..513,562..585,706..708,895..897, 988..990) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350792" misc_feature order(670..675,742..747,820..822,826..831,838..840, 913..921) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:350792" misc_feature 892..903 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="propagated from UniProtKB/Swiss-Prot (Q8R418.3); Region: DECH box" misc_feature 1135..2154 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="propagated from UniProtKB/Swiss-Prot (Q8R418.3); Region: Required for interaction with PRKRA and TARBP2. /evidence=ECO:0000250" misc_feature 1180..1464 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Partner-binding domain of the endoribonuclease Dicer; Region: Dicer_PBD; cd15903" /db_xref="CDD:277191" misc_feature order(1195..1200,1207..1209,1213..1218,1393..1398, 1405..1410,1417..1419,1426..1431,1438..1440) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Trbp binding interface [polypeptide binding]; other site" /db_xref="CDD:277191" misc_feature 1483..2061 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="C-terminal helicase domain of the endoribonuclease Dicer; Region: SF2_C_dicer; cd18802" /db_xref="CDD:350189" misc_feature 1594..1668 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="propagated from UniProtKB/Swiss-Prot (Q8R418.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 1606..1608 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site" misc_feature 1612..1614 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site" misc_feature order(1714..1722,1930..1932,1987..1989,1993..1995) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:350189" misc_feature order(1942..1944,1948..1950,2023..2025,2029..2031) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350189" misc_feature 2257..2523 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Dicer dimerization domain; Region: Dicer_dimer; pfam03368" /db_xref="CDD:460900" misc_feature 2545..2604 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="propagated from UniProtKB/Swiss-Prot (Q8R418.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 3025..3393 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named...; Region: PAZ_dicer_like; cd02843" /db_xref="CDD:239209" misc_feature order(3214..3216,3253..3255,3271..3273,3283..3285, 3337..3339,3361..3363,3367..3369) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239209" misc_feature 3415..3417 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site" misc_feature 3847..3849 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site" misc_feature 4255..>4530 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Ribonuclease III family; Region: RIBOc; smart00535" /db_xref="CDD:197778" misc_feature order(4306..4311,4318..4323,4330..4332,4339..4344, 4351..4356,4360..4368,4396..4398) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238333" misc_feature 4735..4737 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site" misc_feature 4759..4761 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Phosphoserine. /evidence=ECO:0007744|PubMed:21183079; propagated from UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site" misc_feature 4765..4767 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site" misc_feature 5161..5247 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="propagated from UniProtKB/Swiss-Prot (Q8R418.3); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 5395..5889 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional...; Region: RIBOc; cd00593" /db_xref="CDD:238333" misc_feature order(5455..5460,5467..5472,5479..5481,5488..5493, 5500..5505,5509..5517,5545..5547,5809..5811,5842..5844) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238333" misc_feature order(5455..5457,5464..5466,5476..5478,5779..5781, 5788..5790) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="active site" /db_xref="CDD:238333" misc_feature order(5464..5466,5779..5781,5788..5790) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238333" misc_feature 5767..5769 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Important for activity. /evidence=ECO:0000269|PubMed:18268334; propagated from UniProtKB/Swiss-Prot (Q8R418.3); other site" misc_feature 5902..6090 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="double-stranded RNA binding motif of endoribonuclease Dicer and similar proteins; Region: DSRM_DICER; cd10843" /db_xref="CDD:380680" misc_feature order(5902..5907,5911..5916,5923..5928,5935..5940, 5950..5952,5965..5973,5977..5979,5983..5985,6034..6045, 6052..6054) /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:380680" misc_feature 5953..5955 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="Phosphoserine. /evidence=ECO:0000250|UniProtKB:Q9UPY3; propagated from UniProtKB/Swiss-Prot (Q8R418.3); phosphorylation site" exon 514..676 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 677..807 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 808..942 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 943..1103 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 1104..1272 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 1273..1745 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 1746..1878 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 1879..2121 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2122..2276 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2277..2409 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2410..2485 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2486..2625 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2626..2805 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 2806..3019 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 3020..3173 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 3174..3356 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 3357..3462 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 3463..3638 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 3639..4419 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 4420..4575 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 4576..5446 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 5447..5715 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 5716..5878 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 5879..5954 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" exon 5955..9971 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /inference="alignment:Splign:2.1.0" regulatory 6252..6257 /regulatory_class="polyA_signal_sequence" /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="hexamer: AATAAA" regulatory 6272..6277 /regulatory_class="polyA_signal_sequence" /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="hexamer: TATAAA" polyA_site 6277 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="major polyA site" polyA_site 6291 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" regulatory 9951..9956 /regulatory_class="polyA_signal_sequence" /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="hexamer: AATAAA" polyA_site 9971 /gene="Dicer1" /gene_synonym="1110006F08Rik; aviD; D12Ertd7e; mKIAA0928" /note="major polyA site" ORIGIN
gcggagcggcggcgcgacgccggtgggattctccaagccgctgtgcgccgtcgccgcgggccgagcgcgggctgcgggcgagcagggcgctgcgcagtctccgcaggcgcgggcgggaggggtcggggcgcggcgcggtgcggcgcgggcggctccgggcccaggtgaatggagtaacctgacagcgggaacgagacgacggcgagcggcaggaaatggcggcggcggcggcggcgccgggcggcaccgggaggcctgggctgtgacgcgcgcgccggagcggggtccgatggttctggaaggcccgcggcgcccagtgctgcagtaagctgtgctagaacaaaatgcaatgaaagaaacactggatgaatgaaaagccctgctttgcagcccctcagcatggcaggcctgcagctcatgacccctgcttcctcaccaatgggtcctttctttggactgccatggcaacaagaagcaattcatgataacatttatacgccaagaaaataccaggttgagctgctggaagcagctctggaccataacacaattgtgtgcttgaacactggctcagggaagacgttcatcgcggtcctgctcaccaaagagctggcccatcagatcaggggcgacctcaacccgcatgcaaaaaggaccgtgttcctcgtcaactctgcaaaccaggttgctcaacaagtgtcagccgtcagaactcactcggatctcaaggttggagagtactcagacctagaagtaaatgcatcttggacaaaagagagatggagccaagagtttactaagcaccaggttctcattatgacttgctatgtcgccttgactgttttgaaaaatggttacttatcactgtcagacattaaccttttggtgtttgatgagtgtcatcttgcgattctagaccacccctatcgtgaaattatgaagctctgtgagagttgtccatcatgccctcgaattttgggactaactgcttccattttaaatgggaaatgtgatccagaggaattggaagagaagattcagaaactggagcgaattctcaggagtgacgctgagacggcgactgacttggtggtcctggacagatacacttctcagccttgtgagattgtggtagactgtggaccgtttactgacagaagtgggctgtatgagagattgctgatggagttagaagcagcacttgattttatcaatgattgtaatgtagctgtacattcaaaggaaagagattctactttgatttccaaacaaatcctctcagactgccgtgcagtgttggttgttctgggaccctggtgtgcagataaagtagctgggatgatggtaagagaacttcagaagtacatcaaacatgagcaagaggagctacacaggaagttcctattgtttacagacaccttgttaaggaaaatacacgccctgtgtgaagagtacttctcacctgcctcacttgacctgaagtatgtaactcccaaagtcatgaaactgctcgagatcctgcgcaaatacaagccctatgagcgacagcagtttgaaagtgttgagtggtacaataacaggaatcaggataattacgtgtcctggagtgattccgaggatgacgatgatgacgaagaaattgaagaaaaagaaaagccagagacaaattttccttctccgtttaccaatattttatgtgggattatttttgtggaaagaagatacacagcagttgtcctaaacagattgataaaggaagctggcaaacaagatccagagctggcttatatcagcagcaactttataactggacacggcattggaaagaaccagcctcgcagcaaacagatggaggcggagttcagaaagcaggaggaggtacttaggaaatttcgagctcatgagaccaacctgctcattgcaacaagtgttgtagaagagggtgtggatattcccaagtgcaatttggtggttcgttttgatttgcctacagagtatcgatcatatgtccagtctaaaggacgggcacgagcgccgatctctaattacgtaatgttagcagatacagacaagataaagagctttgaagaagacctcaagacctacaaagctattgaaaagatcttaaggaacaagtgttcgaagtcagcggatggtgctgaggcggacgtccatgctggtgtagatgatgaggatgctttcccgccatatgtgctgaggcctgatgatgggggtcctcgagtcacaatcaacactgccattggacacatcaacagatattgtgctcgattaccaagtgatccgtttacgcatctagctcccaaatgtagaacccgagaattgcctgatggtacattttattcaactctttatcttccgattaactcacctcttcgagcctccattgttggtccaccgatggacagtgtacggttggctgaaagagtggtagctctcatttgctgtgaaaaactgcacaaaattggtgaactggatgaacacttgatgccagttgggaaagagactgttaaatatgaagaagagctggacttacatgacgaggaggagaccagtgttcccgggagaccagggtccacaaaacgacggcagtgctaccccaaagcaattccagagtgcttgagggagagttaccccaaacccgaccagccttgttacctgtatgtgataggaatggtcttaactacccccctccctgatgaactcaacttcaggcggcggaagctctacccacctgaggacaccacaagatgctttgggatcctgacagccaaacccatacctcagattcctcactttcctgtgtatacacgctctggagaggtcaccatatccatcgagctgaagaagtctggtttcacattgtctcaacaaatgctcgagctgattacaagattgcaccagtacatattctcacatattctccggcttgagaagcctgccctggagtttaaacctacaggcgcggagtcagcctactgtgttctacctcttaatgttgttaatgactccggcactttggacattgactttaaattcatggaggatattgagaagtcggaagctcggataggcattcctagcaccaagtattcaaaggaaacaccgtttgtctttaagttagaagattaccaagatgcagtgatcattccaagataccgcaattttgatcagcctcatcgattttatgtagctgatgtatatacggatcttaccccactcagtaaatttccttcccctgaatatgaaacttttgcagaatattataaaacaaagtataaccttgacctgaccaatctcaaccagccactgctggatgttgaccacacatcttccagactgaaccttttgacacctcggcatttgaatcagaaggggaaagcacttcctctaagcagtgctgagaagaggaaggccaaatgggaaagtctgcagaacaaacagatcctggttccggaactctgtgctatacatccaatcccagcatcactgtggagaaaagcggtttgtctccccagcatactgtatcgccttcactgccttctgactgcagaggaactaagagctcagacagccagcgatgctggtgtgggtgtcagatcacttcccgtggattttagataccctaacttagacttcgggtggaaaaaatctattgatagcaagtctttcatctcaagctgtaactcctcgttggctgagagtgataattactgtaagcacagcacaactgtagtccctgaacatgctgcacatcaaggtgctactagaccctccttagaaaaccatgaccaaatgtctgtgaactgcaaaaggttgcccgctgagtcacctgctaagctccaaagtgaggtttcaacggatcttacagcaattaatggtctttcttacaataaaaaccttgccaatggcagttatgatttagttaacagagacttttgccaaggaaatcagctgaattacttcaagcaggaaatacctgtacaaccaactacctcatatcccattcagaatttgtacaattatgagaaccagcccaagcccagcaatgaatgtcctctactgagtaatacgtaccttgatgggaacgctaacacatctacctcagatggaagccccgcggtgtccacgatgcctgccatgatgaatgctgttaaagcactcaaggacaggatggactctgagcagagcccttctgttgggtactcctcaaggactcttggccccaatccgggactgattctccaggctttgacactgtcaaatgccagtgatgggtttaacctggagcggcttgagatgcttggcgactcctttttaaagcatgctatcaccacatatctgttttgcacgtaccctgatgctcatgaaggccgcctttcatatatgagaagcaaaaaggtcagcaactgtaacctgtatcgccttggcaagaagaagggactgcccagccgcatggtggtgtcgatattcgatcctcctgtgaattggcttcctcctggttatgtggtaaaccaagacaaaagtaactcagagaagtgggaaaaggatgaaatgacaaaagactgcttgctggctaatggcaaactgggtgaggcctgtgaggaggaggaggacctgacgtggagggcccccaaggaggaggccgaggatgaggacgacttcctggagtatgaccaggagcatatccagtttatagacagcatgctcatgggctcgggcgccttcgtgaggaaaatctctctgtcgcccttctcagcctccgactctgcatacgaatggaagatgcccaagaaggcctccttgggcagtatgccgtttgcctcgggccttgaggattttgattacagctcttgggatgcgatgtgctatctggatcctagcaaagccgttgaagaggatgactttgtggtaggtttctggaatccatcagaagagaactgtggcgtcgacacagggaagcagtccatttcttacgacttgcacacggagcagtgcattgctgacaagagcatagcggactgtgtggaggccctgctgggctgctacttaaccagctgcggcgagagggctgctcagctcttcctctgttcgctggggctgaaggtgctcccagtaatcaaaaggaccagccgggagaaggccttggaccctgctcaggagaacggaagcagccaacaaaagagcctttcagggagctgtgcctctccagttggcccacgctcctctgcagggaaagacttggagtacggctgcctgaagatcccaccgaggtgcatgtttgaccatccagacgcagagaaaaccctcaaccacctgatatctgggtttgaaacttttgagaagaaaattaactatagattcaagaataaggcttatcttctgcaggcttttacacacgcctcctaccactacaacactatcactgattgttaccagcgcttagaattcctgggagatgcgattttggactacctcataaccaagcacctttatgaagacccacggcagcattctccaggggtcttgactgacttgcgctctgcccttgtcaataacaccatctttgcatcattggctgtgaagtatgactaccacaagtactttaaagctgtctctcctgagctctttcatgttattgatgactttgtgaagtttcagcttgagaagaacgaaatgcaaggaatggactctgagcttaggagatccgaggaggatgaggagaaagaagaggatatcgaagtccccaaggccatgggggacatttttgagtctcttgctggtgccatttatatggacagtgggatgtctctggaggtggtctggcaggtgtactatccgatgatgcagcctctaatagaaaagttttctgcaaatgtgcctcgttctccagtgagagaattgctcgagatggaaccagaaactgccaagtttagcccagcggagagaacttatgatggaaaggtcagagtcaccgtggaagtggtgggaaaggggaaatttaaaggtgttggccggagctacaggatcgccaagtctgctgcagcacgaagggccctccgcagcctcaaagctaaccagcctcaggttcctaacagctgaagcttccggactcacaggcggcaagacagcggaccagaaccacagctccacggcacaaggatggttcgggctgacacagaacaggaaaactgaaggcagaatttaaagtttgataatgagatagataacagaataaaacatgtaatatgtgtataaactctttggaactaattttggtttagtttttgcgcagacacaatcttgtcttctttacccaccctgctttgcttagtcacaggagtgctttaatcctggtgtttgttagcaaggttttaaaatcattttgacaggtttttggttttgtttgttttgacatttaatttctgtcgactttgcttggtgttagaggccatggagcttaacctctaacagtccctagaactgggtcgtcctgaccttgcggtcccttacactatacctgtcctgctgcggtgtcaagcccaacaaaaagggcagagtgtgcaaaggaagcccccgtgctgtggagggcagtggaggcggggccgggcggaccccgggtactattgcacggaatagtaagggacagattttgagtccgtgttggctgctggtgagtggaggccaggctttcagacgccacattgtgctgcagagaggattcttgccttaaaaggaaggacttgatagtttgcttttttattttgccttccccttattatgcattggatgaaatggggtggcagctcactagggcacttgcaatggaactattgcaggtaggatttctgttgtttgtactgaagacattctaaaacccagagtgagtatatagatttttaaagcatcattatagacaggatacatgactagatgcccggttttcctcagaacttcctgccaggtggtcccagtggcggaaatgcccggtcagctgctgttctgacgaaatgagcctgagatgcagtgtacctagacacgccacaggtctgtactaggcagtgttgccagagtcaccaaagctgtgctctctttcctatggggtcagcattgtggcagactgccaggaccaacccgtctggggtagaagtcaccagtttagataaactaggtcattagttcatctcagactcagaaagtaaagctgtttaggcatttgctgaaggtctcgcctgggcttgtgggcccctcttcacttacacacctcagtccctccctttgcctgcattttcccgttggtgctacgtttatgtatcatgcttgaagtttaattttttgcactgtgactataatacctcttaatttacatttaaaaatgctgtatgggttgcccgtgccctcccaccgacacacaggagagctttgctgcaatttgccctcttacgcttgaagtctcagcaggctgagccagggtagctcgcgttccccacacatctcctgaggctgatgcttcatgtaatgctgcacttaggttcaagtcacccgcccgagagagagagagagagagagagagagagagagagagagagagagatgctgtgtgtgtgcaagcaagcactcgggctgtcaggaaccccatggggagggagagtgagcgtccccaaggatcacgtgctgttgctgttgcccatctgcaaagcaggatctgagttattgtttggtgaaattaatttggctgactcatcttaagtatttaattctaacgtgcgattgtagttgtctgtttgacttagaacatccctctcccccatgcgcgcgcacacacacacacaaaccttaatgcaagacatcctagcatgtgcaaaccaggtgatcttttgaatgttgtagctataatttgtatagtcagatagtaaggtggggtgggattgtgggaggtggagtttgttgtcttatcacagtccttggggatttataaactacctgattctctgcattgtgattcgtgcatttatgtcctgggatggatgctctggcatcctggcaccaaaagcagatggtttcacacttggattcctggtggaagaagaaaatgcctcagtatattttgtaacataaggagagtattttttgttaatattgaaaagttcagaattggatatgcttcgttcatccattctcagggctcaaatgttttgccactattcagaatgttgtatcaatagcaaacttgggctgtttttctttttctttcttccttctttttttgattgctgttagataaaagtacctgataactagtttgaatcatactgtgatttacccagagaccaagtccgaaaaatcaaaagtatgagttagacgcgcgatcaggagtgcgtttgtttgtgttgggggttgtccccaggttcgctggttgaaagactttgcattttagagaaaaagttgttctgccccctccctcgatgactccatgagcctcctccactggtgtagcaggaggaggaggaggagacagccagcgcccatgaggaggaagcagctgcacagatcctgtggctgcatgcgagctcggcgggcactgcactgttgggccgtcccctgtggcccttttgcaatcccaggcaggcagagtgagtgaggccctgtcctctgttgggttgtgtctgtgtggcacaggctgggcagtgctccggcactcacgcttaacccagaggggaggccatgcttgggcctcaccgcggttccgacttgagaacattctgggatgcctgcagcttgtcacacaattgcacatttgaactgttattatttttgtctgtgacattttcttttatctgtaaagttgaaagcatggcagagatttgttgactgaacacttaattatgctttttaaatgttttggttacgtttcttctttttttcgttcatattatgtgaaatgattaaatttagaataacctctaacactcctataattatcgtttaaaataccgatgtttttattttctcgacagtagtccgtcctcagaaagatgcagacaccctgtgtaattagcagggacttgaggctgcttcggttctgccgctcagttcccgtgtacagtcaccagcagccaccagacagtggctgagagcgtggagggagaccagtcaaaaacccacaaccacccgctttgctcgtggggcctgttgatttaaaactactccttgctcggtgaaggcacctagtcctcctgcacaaacttaactgctggcaatccgaggccttgcacctttatttcacagaccctgagctgagcctacagccgcatccttagccacctcgggctctgtgtgtctcctctgtgcttaacaacgcccaagaacccatagcttcccatctgctgattgcttctctggaatttaattatttctcaataaattctgtattttatattgtacgtgagacattttaaagatatgtttgagaccaaggatagttaaaatgactgtaaaggtagtgtgtctgccatggagacggagtgctgtccactggcagggaaaatgatcacctcaaactaatttgcagttattatttgactcattattttcttgtctgtctttctttgataaacaaccacagacagtttaaatgtcatacatggcctcagaatttgccttggctgctggttccatagcagaagcactgaggtgaagggaagaacatatctgccttttgtgctgtaaataaagggaaatgactaacggagtcaggctgagtgttctgccgacaagaaacggaatcacatcacactctgcagccttctaaagaaacctgtatccatgcacacagctatcactgcagagctgtgccagcacctatggaccacagttacctttagcttttccgttttgttttgtttttctttttctttttaataattgtagtcaataaagttattgtctgttca
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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