LOCUS       NM_001411566             879 bp    mRNA    linear   ROD 12-SEP-2023
DEFINITION  Mus musculus FK506 binding protein 14 (Fkbp14), transcript variant
            4, mRNA.
ACCESSION   NM_001411566
VERSION     NM_001411566.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Bedogni F and Hevner RF.
  TITLE     Cell-Type-Specific Gene Expression in Developing Mouse Neocortex:
            Intermediate Progenitors Implicated in Axon Development
  JOURNAL   Front Mol Neurosci 14, 686034 (2021)
   PUBMED   34321999
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 879)
  AUTHORS   Carninci P, Waki K, Shiraki T, Konno H, Shibata K, Itoh M, Aizawa
            K, Arakawa T, Ishii Y, Sasaki D, Bono H, Kondo S, Sugahara Y, Saito
            R, Osato N, Fukuda S, Sato K, Watahiki A, Hirozane-Kishikawa T,
            Nakamura M, Shibata Y, Yasunishi A, Kikuchi N, Yoshiki A, Kusakabe
            M, Gustincich S, Beisel K, Pavan W, Aidinis V, Nakagawara A, Held
            WA, Iwata H, Kono T, Nakauchi H, Lyons P, Wells C, Hume DA,
            Fagiolini M, Hensch TK, Brinkmeier M, Camper S, Hirota J, Mombaerts
            P, Muramatsu M, Okazaki Y, Kawai J and Hayashizaki Y.
  TITLE     Targeting a complex transcriptome: the construction of the mouse
            full-length cDNA encyclopedia
  JOURNAL   Genome Res 13 (6B), 1273-1289 (2003)
   PUBMED   12819125
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC084800.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR13948564.1724307.1,
                                           SRR17253012.8802240.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849381, SAMN01164131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-328               AC084800.5         98195-98522         c
            329-480             AC084800.5         94621-94772         c
            481-608             AC084800.5         91151-91278         c
            609-879             AC084800.5         88047-88317         c
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="6"
                     /map="6 27.01 cM"
     gene            1..879
                     /gene="Fkbp14"
                     /gene_synonym="FKBP-14; FKBP22"
                     /note="FK506 binding protein 14"
                     /db_xref="GeneID:231997"
                     /db_xref="MGI:MGI:2387639"
     exon            1..328
                     /gene="Fkbp14"
                     /gene_synonym="FKBP-14; FKBP22"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    99..101
                     /gene="Fkbp14"
                     /gene_synonym="FKBP-14; FKBP22"
                     /note="upstream in-frame stop codon"
     CDS             132..653
                     /gene="Fkbp14"
                     /gene_synonym="FKBP-14; FKBP22"
                     /EC_number="5.2.1.8"
                     /note="isoform 4 precursor is encoded by transcript
                     variant 4; peptidyl-prolyl cis-trans isomerase FKBP14;
                     rotamase; PPIase FKBP14"
                     /codon_start=1
                     /product="peptidyl-prolyl cis-trans isomerase FKBP14
                     isoform 4 precursor"
                     /protein_id="NP_001398495.1"
                     /db_xref="GeneID:231997"
                     /db_xref="MGI:MGI:2387639"
                     /translation="

MRFFLWNAILALWVTVLSGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPVWFTLGILEVLKGWDQGLKGMCVGEKRKLTVPPALGYGKEGKGKIPPESTLIFNIDLLEIRNGPRSHESFQEMDLNDDWRLSKHELELQAHAPFAVLGV"

     sig_peptide     132..188
                     /gene="Fkbp14"
                     /gene_synonym="FKBP-14; FKBP22"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    243..527
                     /gene="Fkbp14"
                     /gene_synonym="FKBP-14; FKBP22"
                     /note="FKBP-type peptidyl-prolyl cis-trans isomerase;
                     Region: FKBP_C; pfam00254"
                     /db_xref="CDD:425560"
     exon            329..480
                     /gene="Fkbp14"
                     /gene_synonym="FKBP-14; FKBP22"
                     /inference="alignment:Splign:2.1.0"
     exon            481..608
                     /gene="Fkbp14"
                     /gene_synonym="FKBP-14; FKBP22"
                     /inference="alignment:Splign:2.1.0"
     exon            609..879
                     /gene="Fkbp14"
                     /gene_synonym="FKBP-14; FKBP22"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agaaaaagtgccacgtcttcctgggagtgtgtctgttgggggagtcctgaacttgcttggcctaagctgtctccgcttttggcacatttttaactctatgaagtcgggggcctttcctctgctttggtaacatgaggtttttcttgtggaacgctatcttggcactgtgggtcacggttctgagcggagctctgattcctgagccagaagtgaaaatcgaagttctccagaagccattcatctgccatcgcaagaccaagggaggggatctgatgttggtccactacgaaggctatttagaaaaggacggctccctgtttcattccactcacaaacataacaatggtcagcctgtctggttcaccctgggcatactggaggttctcaaaggctgggaccaaggcttgaagggaatgtgtgtgggagagaagcgaaagctcaccgttcctcctgccctgggctatggcaaagaaggaaaaggtaaaatccctccagagagcacactgatattcaacattgacctcctggaaattcgaaatggcccaaggtcccacgagtcgtttcaagaaatggacctcaatgacgactggagactctctaagcatgagctggagttgcaggcacatgcgccttttgcagtgctgggcgtttgaaattgggtcctcatgcttccgcagcaaatggtcacagccactgagccatctccccactcctccattgtattttaaagacaatagaaaacggtaacatagacactcacaagaccctgctttgatttctaagttcacaggctctgctggtgtggcctcatcacaacctgtacacagttctttctactcgtagacttgggttcaaataaaaaggaagactggaatcata

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