2024-05-03 12:33:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001410591 3965 bp mRNA linear ROD 08-AUG-2023 DEFINITION Mus musculus exo/endonuclease G (Exog), transcript variant 4, mRNA; nuclear gene for mitochondrial product. ACCESSION NM_001410591 NR_153321 VERSION NM_001410591.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3965) AUTHORS Man JCK, Mohan RA, Boogaard MVD, Hilvering CRE, Jenkins C, Wakker V, Bianchi V, Laat W, Barnett P, Boukens BJ and Christoffels VM. TITLE An enhancer cluster controls gene activity and topology of the SCN5A-SCN10A locus in vivo JOURNAL Nat Commun 10 (1), 4943 (2019) PUBMED 31666509 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 3965) AUTHORS Szczesny B, Brunyanszki A, Olah G, Mitra S and Szabo C. TITLE Opposing roles of mitochondrial and nuclear PARP1 in the regulation of mitochondrial and nuclear DNA integrity: implications for the regulation of mitochondrial function JOURNAL Nucleic Acids Res 42 (21), 13161-13173 (2014) PUBMED 25378300 REFERENCE 3 (bases 1 to 3965) AUTHORS Stryke D, Kawamoto M, Huang CC, Johns SJ, King LA, Harper CA, Meng EC, Lee RE, Yee A, L'Italien L, Chuang PT, Young SG, Skarnes WC, Babbitt PC and Ferrin TE. TITLE BayGenomics: a resource of insertional mutations in mouse embryonic stem cells JOURNAL Nucleic Acids Res 31 (1), 278-281 (2003) PUBMED 12520002 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC166052.5 and AC121922.3. On Aug 10, 2022 this sequence version replaced NR_153321.1. ##Evidence-Data-START## Transcript exon combination :: SRR13422597.351972.1, SRR17784644.218628.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## gene product(s) localized to mito. :: reported by MitoCarta ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-191 AC166052.5 3278-3468 c 192-226 AC166052.5 3107-3141 c 227-340 AC166052.5 2627-2740 c 341-490 AC166052.5 1330-1479 c 491-529 AC166052.5 1-39 c 530-630 AC121922.3 124962-125062 c 631-707 AC121922.3 123636-123712 c 708-822 AC121922.3 121148-121262 c 823-3965 AC121922.3 107972-111114 c FEATURES Location/Qualifiers source 1..3965 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="9" /map="9 71.33 cM" gene 1..3965 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /note="exo/endonuclease G" /db_xref="GeneID:208194" /db_xref="MGI:MGI:2143333" exon 1..191 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /inference="alignment:Splign:2.1.0" exon 192..226 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /inference="alignment:Splign:2.1.0" exon 227..340 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /inference="alignment:Splign:2.1.0" misc_feature 298..300 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /note="upstream in-frame stop codon" exon 341..490 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /inference="alignment:Splign:2.1.0" exon 491..630 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /inference="alignment:Splign:2.1.0" CDS 598..1284 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /EC_number="3.1.30.-" /note="isoform 4 is encoded by transcript variant 4; endonuclease G-like 1; nuclease EXOG, mitochondrial; endo G-like 1; endo/exonuclease (5'-3'), endonuclease G-like" /codon_start=1 /product="nuclease EXOG, mitochondrial isoform 4" /protein_id="NP_001397520.1" /db_xref="GeneID:208194" /db_xref="MGI:MGI:2143333" /translation="
MAPAGNNKFSSEAMAETFYLSNIVPQNFDNNSGYWNRIEMYCRELTERFEDVWIVSGPLTLPHTRNDGTKTVSYQVIGEDNVAVPSHLYKVILARRSPESTEPLALGAFVVPNKAIGFQSQLSEFQVSLHDLEKMSGLVFFPRLDRSRDIRNICSVDTCKLLGFQEFTLYLSTRKIDGARSVARLEKVLEALKSSGVEPDDYFLSRYEKKLEELKAKEQKDAQLEKQS"
misc_feature <598..1038 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /note="DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases. They exists as monomers and homodimers; Region: NUC; cl00089" /db_xref="CDD:444690" misc_feature 688..690 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:238043" misc_feature 1081..1227 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /note="Endo/exonuclease (EXOG) C-terminal domain; Region: Exog_C; pfam18026" /db_xref="CDD:436219" exon 631..707 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /inference="alignment:Splign:2.1.0" exon 708..822 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /inference="alignment:Splign:2.1.0" exon 823..3965 /gene="Exog" /gene_synonym="Endogl1; Endogl2; Engl; ENGL-a; ENGL-B; Engla; Englb" /inference="alignment:Splign:2.1.0" ORIGIN
agagacaaagtgctggcgcccgcgagtcatggctgcaaagagcttcgcttcccgtctcagggactcgcggcgatttctgaatggcttcttggccggggctgtagtgggcgccgcgggagcggggctgacggcgctgcagtttttccggcgtccggacgcggaatccgcgaagctggcgaggcagccacacggtgcagcacagtgcctggtacagaattggccttcagaatacccggaggcctgcttctcaggtgtttctagattctgtcaaattgacaacatcacaacaagaatgtttgaaggcgtttccgtaaagaatatctgctacccagtcttcctaaatctgcagaagaagctgtcttggaacagtttgggtttcctttagctggaacagagacgaggcgttacactaaccacgccctgtcttacgatcaggcaaaacgggtgcccagatgggttcttgagcatatatccaaggacaagatcatcggtgacgctgacagaaagcattgtaaattcaagccggatccttctgtcccttcagccttcagcgccctcaatgaagactatatcgggagtggctggtcacgaggccacatggccccggcaggaaataacaagttttccagtgaagccatggcagaaaccttttacctttctaatatcgtgcctcagaattttgataataactccggctactggaacagaatagaaatgtattgtcgtgagctgacggagagatttgaagatgtttggatagtatcaggacctttaaccttacctcatactaggaatgatggaacgaaaacagttagttaccaggtgattggtgaggacaacgtggccgtcccctcgcacctttacaaggtgatcctggctcgcagaagcccggaatctacggagccgctggcgctgggggcctttgtggtgccaaataaagccattgggttccagtcccagttatccgagttccaggtgagcctccatgacctggagaagatgtcaggtctggtgtttttcccccgtctggatagaagcagggacatccggaatatttgctctgtggacacctgcaagctcctgggtttccaggaattcactctgtacctgagcacgaggaagattgatggagcccggtctgtggccagactggagaaggttctggaagctttgaagagctcaggggtggaacctgacgattacttcctgagtcgctatgagaaaaagctggaggaactgaaggctaaggagcaaaaggacgcccagctggaaaagcagtcctagtgtctgtctcggtgtgcactgagcacctgtgaccaacaggtttattttcaagaaatgatggaattctgaccaaaatcctccaaagactcggggctcaaaactcagtgtcgtccttctctgggatccgaggtggctgagatggttttaaaactctgctctcacgtgctccttccctcatgaccctgaagtcctcccatctgtctgtgttggagaatccagtgactgttcttcctctgtgcaaaccctgctgtcccatcttacctgtgggcaagatgaggctcagagaactctgtatctttaccattggtattcaacagaagtcatccagggtgcctcagagtcaagacagagttagatggatgtaactcagtccgtacctgcatccacggctgtttctggcactacagccctcctggtgagaagggtgtgtctcttctcgcatcatttctgtgggaaaaaacagtgggtcttggaaagatggagatgttttgtgggtttaaccagagactgtggttccctccagggatcacatggtgccagataagtatgtttcttgcctcattggggcctttctaaaggagcccaagaaaggtgtttgccaagagtcgccgggtacctctggtcctgctgtctgctggaccagcacaccacaggtaggtatagcctgggcccaaggtccgaaccagctcattgcctggggaaagagcagctgctgtctgtgctgacctccagactggtttatacagatcttgagctgtcctgagtccatgcgcacagcccagaagcttctgggcaaaaggactcgtctgaatctgccactctgccactgtcctccaagcaatacgagagtgatctttgtggcattgtgtttgcctccgatagaaatgcatgactttacaataaagacaagaaggctctggctgaccctcttctgctccttcatttggagaaaaagaaactgtcaggtgtaggacacagtgacggattagctccgttctgcggtaccttcctcttccccattaacttgtgccagtccttctgaggatagaaagccaaaatgtcaccatgaccgaaaaaaaaatctgttactttctctcctcagaaaagaggtgatggcggggcctgagtgtttctccagcagccctgggaaggaggctgaggctcctcctgcctgtgccccaggttcccaccatgtgtttatgcagccgagctcctcctcctgttgccgtgctctcctctgctggcctggcttgctgctggctttggagttgcttcccacactctccctactcaggaagaatcttgtctgtatcagaaagtttctgtagcctgggattttatttcttatggcagatgctacctggccattgtaagacagaaataagagcaaaccaaaaagacagcacgcctgactgcatatttatttatttatttattgaatctgtatttcttatgagtgttttgcctgtttgcatctgtgcataccacacgagtgcctgttgcccacagaggttagaagagctcattggataccctggaaatggaatcccagatggttctgagccaccgtgtgaatgctggattctctgcagttgaatcggggttctctgcaagagcagccagtgctcttgagccccgatctcagattttatgtgtgaaatatctattgacatataacactgatccttgaattgtcctgtgaacatttgcattaagaggacccaaaacaaacacttaaaatggcccctcagtgtgactgtccgtttttctggattgcagtgcagcagattcctgggccatacttgagtatcaaatgtgtcagaggcagacgttgtagccagtcaaacctgagtggggtcactgtctgttcgtcacctcagtgggctccctcaggttcttgggctgagccttctgggccattcacccttccagttcctggtctgaagaaatgaccaggctgggttggctctgctgtgggaagtccctgtctcggggagggagatttaattcttaatctttcatcatttctagtgatgtcttcaagttctttggtctttggactaaggctgttggccaaagctgaatacagcaaaagccttactggaagttagagaggttagggagagggatgcgagcccctgaactgcgctgccatttctgctcttacatcttaaccagcagagacctctacccttctcttcggcctttgacgagtgcccagcaggagaggcagtctgctcttgagggaatggcttcctgcagagctgtgctcagtttgcagcctgacactggcatgatcctgtgtgcctccatgtcacctgtgcgccctgcctcatctgagagggtattgttgagctcactccgtttgtggcagacttcctgttaacggcttgtgaggggtaggatgtgccctgccaactgcacccacagcctgtgcacctgtgaaagccctgcagttcttgggagaggaggcctgactggtggaagtgggtcagtagaagcaggctttgaaggttaaccccctctcgcttcgggcctgtgtgctttgctttctgtctgccgccatagaaacatataaacctctggagactgctgttcctgttgccctgcctcccataccatagtggactggaatcccagcgctgtcggatcaaataaatccttcccgaagttgcttctga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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