2024-09-28 11:19:53, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001368374 5188 bp mRNA linear ROD 04-APR-2024 DEFINITION Mus musculus ring finger protein 122 (Rnf122), transcript variant 2, mRNA. ACCESSION NM_001368374 XM_006509189 VERSION NM_001368374.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 5188) AUTHORS Bedogni,F. and Hevner,R.F. TITLE Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development JOURNAL Front Mol Neurosci 14, 686034 (2021) PUBMED 34321999 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 5188) AUTHORS Wang,W., Jiang,M., Liu,S., Zhang,S., Liu,W., Ma,Y., Zhang,L., Zhang,J. and Cao,X. TITLE RNF122 suppresses antiviral type I interferon production by targeting RIG-I CARDs to mediate RIG-I degradation JOURNAL Proc Natl Acad Sci U S A 113 (34), 9581-9586 (2016) PUBMED 27506794 REMARK GeneRIF: RNF122 suppresses antiviral type I interferon production by targeting RIG-I caspase activation and recruitment domains to mediate RIG-I degradation. REFERENCE 3 (bases 1 to 5188) AUTHORS Piao,Y., Ko,N.T., Lim,M.K. and Ko,M.S. TITLE Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method JOURNAL Genome Res 11 (9), 1553-1558 (2001) PUBMED 11544199 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC109163.16. On Feb 8, 2019 this sequence version replaced XM_006509189.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## Transcript exon combination :: SRR17784650.1326190.1, SRR13422601.157336.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849374, SAMN00849375 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-123 AC109163.16 99528-99650 124-280 AC109163.16 102906-103062 281-326 AC109163.16 109327-109372 327-368 AC109163.16 109641-109682 369-448 AC109163.16 112730-112809 449-5188 AC109163.16 113054-117793 FEATURES Location/Qualifiers source 1..5188 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="8" /map="8 17.97 cM" gene 1..5188 /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="ring finger protein 122" /db_xref="GeneID:68867" /db_xref="MGI:MGI:1916117" exon 1..123 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" CDS 69..563 /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="isoform 2 is encoded by transcript variant 2; ring finger protein 122 homolog" /codon_start=1 /product="RING finger protein 122 isoform 2" /protein_id="NP_001355303.1" /db_xref="GeneID:68867" /db_xref="MGI:MGI:1916117" /translation="
MAGRRRLLAVEEGPVGPEGCFCGLGLVSTNKSCSMPPISFQDLPLNIYMVIFGTGIFVFMLSLIFCCYFISKLRNQAQSERYGYKEVVLKGDAKKLQLYGTCAVCLEDFKGKDELGVLPCQHAFHRKCLVKWLEVRCVCPMCNKPIAGPTETSQSIGILLDELV"
misc_feature 369..506 /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="RING finger, H2 subclass, found in RING finger protein 122 (RNF122) and similar proteins; Region: RING-H2_RNF122; cd16676" /db_xref="CDD:438338" misc_feature order(372..374,381..383,426..428,432..434,441..443, 450..452,483..485,492..494) /gene="Rnf122" /gene_synonym="1110063C11Rik" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:438338" exon 124..280 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" exon 281..326 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" exon 327..368 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" exon 369..448 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" exon 449..5188 /gene="Rnf122" /gene_synonym="1110063C11Rik" /inference="alignment:Splign:2.1.0" ORIGIN
aaggtacacagaagagccatggcaaatgtggggaggatgttggccctctttcagcatcagatttttctatggcaggacgaaggaggctcctggcagtagaagaaggtcctgttggtcctgaagggtgtttctgtggcctgggactggttagtaccaacaagtcctgctcaatgccaccgatcagtttccaagaccttcccctcaatatctacatggtcatcttcggcacaggcatcttcgtcttcatgcttagcctcatcttctgctgctacttcatcagcaaactccggaaccaggctcagagcgagcgatacggctacaaggaggtggtgcttaaaggtgatgctaagaagttacagctctatgggacctgtgcagtttgcctggaagacttcaaggggaaggatgaactaggcgtgcttccatgccagcatgcctttcaccgcaagtgtctggtgaagtggctagaagtacgttgtgtctgccccatgtgcaacaagcccatcgcgggccccacggagacctcgcagagcatcgggatcctgctggatgaactggtgtaagcgctcctggcacatggaccctgggaaagactgccgactttgggtacctgggtttctctacacaatgaacaagactcacacacacctaaaggcaaggatgacagagccgagcttctcccagcaccgcaggaccagtaccagacttgtccagtctccgcctcccagggcttctctccgttatccatttccaatggcctcatccaggtagactgctctatcctggcactggactgaccgtccatccagccatctccacccacctcatctttgccctgggaaggagtccactgggtgactgtgaccatgaacgcctccctttggacaacaagcgactctgaccttgaaaggctctgccccacccatgtccttcactcctgccagagctttccttgggatggtttccaagggaaaggagagaaagatcaagaaaccaagacgaaaggctctgtgtgaagtcaaggaaagcagggccctaaaaaagggaaaaatcaatgtttacatgggatgccggaaacaaaggccagcctcgccctggctgactgcagggtgatgggaccagccctcccgttaggatctgaggtgctattcattctctccctggccctgcttaatctcagagccttctagtcatcgttggtttggaagagacccctctctataggaaggggtctaatcctcaagcccattgtcaggggctttttttttttttctttttggaagcaaaacgggcctcaggctggggatggttgggaggataccatagtgcagatgtctccttcccctctgtaaatagtatttttatacttcatcttcaccatcaccatctcaggctttacacgtgcagcccctcccccacccaggatggaggggggggctgtggagtgtccccttccttccctgaacagggcggctgagagtgggaaaaggttatgtatttaaagaaaattaaatttaataacatgtttctctaatcaaatttttggcttgtggttgtggcctgtgccaggagagggaacagagctctttacctgccttcccccagtcagaccatacttgaggtttctaatccttaacaaaacctgagggctggacatctatctcaacaatagagtgcttgggtaacatgctcaaggccctgggctcagtttttggaatggaaaaaaaaaaaaaaaaagtggggagggaggattaacttattgaacactggtataaaataagatctgatgaagccaggatcaatcgttggaagttttagaaacattgtaaagttgatttcaagcacagcattcactcaactgacttgaattctacctggtggttgattgtcagtgatctggcgacctcagaggcccatgtagctaccctggcaccccatctctttactaatcctgtgtcgctgacagtccctccctggcacatcctagcctcctacacacatctagaattccatgtggtagcaacaggtatgaccctgcgtgcatccagatcctccacccacagcctccagcttagctttgccagtttcccaaggggcctgctgtcaacagtgagtgcgatcagaatgggatggtgttgggaacacctttcttaagcataaggtaactagaccctggttggcccttgcttgggagcacaaatcgatgccagtcaagcaggcagcacgccttgggtgctgagctcaggaaagccatttgctgagcatggtttggattgatgtcagctgtgaaaaagctacccatcattgagtactagatacctggagtaggtatagtgctgtcttactcagccattgtcttatgcatcttggacaacaccaaggtgtaattgggtacctgactatgggctcttctacaggaaggtgcctttactctttacattaagtgacccctgcttgctattgtcaaccttaagagaaacagatctctctccactgggtcaccacttcctcttctagcagtgatagtctggaagtattgaggaattttgatgtattttctcagccgatttcagcctacccctcagttcctgctgcaggtggattcactggtggagaaagtaatcaggttggctttgtatctcccacctcatcatctctccttgcaactgggagggttcatcagtgttagcatcctgatgaaaatgttagcacgaaaaagcttgtttcacagctttcaaaacagtgttaccaggtcaaaatgatgtgggggcaggaaataccttttattccccgtgcttctattgaacctgggtggtatatattacagagtacacagaagggaaaatgatactggttagctgatcagctcaactggcagccgctaagcacaattagacactatgtccccaattcacacagtcacctgtgaagtcttgtgacttggttaagcctttttagaacacctgctgcctggtttggccacttgacaggcaaatcctgaccttggcgaaatggtgtgagcactgtgcttgggtggcaagctcacataatcgagatctttactcagctgtcttttcagcagcagcccgagtgtatattgccaagacatgatgctcaatcagcagcccgagtgtatgccaagacatgctcagtctagggagcagtaatgtggacattgactttgattaaccagactgtggggaccagagagttcaaaccattctgtatgaactgaggtgggaaagacagtaggttagaacataaagggaggaagtactgtgtggaagccaggaacaggattggatagagtaagcaccctgaactttatttacataaaacttaaaaaaaaaaacccactatgttccatctgagaactaagcaaattattctctcctctgggtcctatatatagccacaggcagctacaatagacctataactattcaaattagcaaagaatgtataccttgaatatatctgaaagggaaaaagatcaaaggaagttgtgttgtgaccagtacatgccagcttcagcaaagaagggtttttgttctttccccccaacagaagacatttttcttgcttctctgaatatactgaatttaggattagtttgtttaaaaaaaaatcggtgctcacataattagacactaagtgtcagctaactaacacaaccccaggcagtgtggatccaaggtcagtgtcactttccttgccccacagttttgaaagcagatggtgctaaagactctcaaagtaccaggtgctgtcaagcctggtgcagtctgggaagacaagcctcatcataggcctgtgagctgtaccctagccactgttaggaacagggcagggtcttggaatttatagtctgtgtttgattacttgtttaatttggtgtctcttgtgtttaattccacaatgaatgactttttaaaaaaagatttattatttatatgtatgtatactgtacctgtcttcagacacaccagtagagggtgtcagatgtcattatggatgattgtaagccaccatgtggttgctgggatttgaactcaggaccttcagaagaacagtcggtgctcttaacctcgctgagctatatctccagctcccaatgaatgacttaagtcttaaatagaaccaccatttaaaactgggtaaatgaagtgagacagagctcctctagggaaaaatttgaaattcagcgatagcttgggataatggtgataggtgaatttaaaagtgggctaccacattgggtcacacatgcttttaatcctgacacctgagaggcagaggcaagtggatctctgaatgtgaggccagcttggtctggtctacatagatagccagggttatggggagtggggggaggtgcggggagggggagaagtcacccttcctcttgatagttctactcaaccagcacttcccatgtgttcactagaatttttattccttagttctgtcaagattgtcccttatacatgcctaccctccattctatcacattgcccgtctctttgaacatcagagtaacatcctgccaggtcactggaagctcagacttctgttgaagcctcatccacaggttcggaggggcagatgtgattgagttggagacaagaactgttattatacaaattcatgggacatgacgccatttatcatcccacttaataagcattggattccaactgatccaatccaagaaaataaaaaccatgcccatttcccttctgatgggaagacatcaaatgtcacctttgtgttttgatccgttccttatgtgacagcttaacaagaaaccatcatgtgctctgtagaggaatagctagggggacatcagccaggagatatactggaagacacttttgatggcgactgagtgttctcagtcacgaccccccacaaagctcacttttcttcctcttttttcctccaattttcttcatctattcctattctctaacattactaagatgccatactattgaagaattttccagatgggctgtaggtaccatgaatggggctctgagttctaaatgttcagtaaataagcattgagtctcaagggggtgctgatatcctcaaagacatgaatatcatttgtgatgtctggaacattaaaggaacgatgtagcataaagaagccaataaaaaccagaagaaatctctactggaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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