2024-09-28 11:19:37, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001360720 1332 bp mRNA linear ROD 05-JUN-2024 DEFINITION Mus musculus STAM binding protein like 1 (Stambpl1), transcript variant 6, mRNA. ACCESSION NM_001360720 XM_006527457 VERSION NM_001360720.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1332) AUTHORS Lavorgna,A. and Harhaj,E.W. TITLE An RNA interference screen identifies the Deubiquitinase STAMBPL1 as a critical regulator of human T-cell leukemia virus type 1 tax nuclear export and NF-kappaB activation JOURNAL J Virol 86 (6), 3357-3369 (2012) PUBMED 22258247 REMARK Erratum:[J Virol. 2012 May;86(9):5409] REFERENCE 2 (bases 1 to 1332) AUTHORS Kitajima,K., Matsumoto,K., Tahara,M., Takahashi,H., Nakamura,T. and Nakamura,T. TITLE A newly identified AMSH-family protein is specifically expressed in haploid stages of testicular germ cells JOURNAL Biochem Biophys Res Commun 309 (1), 135-142 (2003) PUBMED 12943674 REMARK GeneRIF: AMSH-FP is specifically expressed in haploid stages of testicular germ cells and has a functional role in spermiogenesis [AMSH-FP] REFERENCE 3 (bases 1 to 1332) AUTHORS Takahashi,H., Koshimizu,U. and Nakamura,T. TITLE A novel transcript encoding truncated LIM kinase 2 is specifically expressed in male germ cells undergoing meiosis JOURNAL Biochem Biophys Res Commun 249 (1), 138-145 (1998) PUBMED 9705845 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AC102285.7 and AK007087.1. On Feb 10, 2018 this sequence version replaced XM_006527457.3. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AB066212.1, AK007087.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-17 AC102285.7 61415-61431 18-301 AK007087.1 2-285 302-418 AC102285.7 62871-62987 419-1230 AK007087.1 403-1214 1231-1332 AC102285.7 69022-69123 FEATURES Location/Qualifiers source 1..1332 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="19" /map="19 29.35 cM" gene 1..1332 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /note="STAM binding protein like 1" /db_xref="GeneID:76630" /db_xref="MGI:MGI:1923880" exon 1..181 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /inference="alignment:Splign:2.1.0" misc_feature 173..175 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /note="upstream in-frame stop codon" exon 182..539 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /inference="alignment:Splign:2.1.0" CDS 260..1072 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /EC_number="3.1.2.15" /note="isoform 2 is encoded by transcript variant 6; AMSH-family protein; AMSH-like protease; AMSH-LP" /codon_start=1 /product="AMSH-like protease isoform 2" /protein_id="NP_001347649.1" /db_xref="GeneID:76630" /db_xref="MGI:MGI:1923880" /translation="
MRQQQLESEQFLFFEDQLKKQELARGQIRGQDSPVLSEQTDGSALSCFSTHQSNSLRNAFADHPHKSDGSNFANYSPPVNRALKPAATLSAVQNLVVEGLRCVVLSRDLCHKFLLLADSNTVRGIETCGILCGKLTHNEFTITHVVVPKQSAGPDYCDVENVEELFNVQDQHGLLTLGWIHTHPTQTAFLSSVDLHTHCSYQLMLPEAIAIVCSPKHKDTGIFRLTNAGMLEVSTCKKKGFHPHTKDPKLFSICSHVLVKDIKTTVLDLR"
misc_feature 557..1069 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /note="Mov34/MPN/PAD-1 family; Region: MPN_AMSH_like; cd08066" /db_xref="CDD:163697" misc_feature order(635..637,800..802,806..808,830..832,839..841) /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /note="MPN+ (JAMM) motif [active]" /db_xref="CDD:163697" misc_feature order(641..649,722..736,743..748,755..757,764..766, 782..787,794..796,800..802,806..808,830..832,836..841, 845..850,857..862,866..871,980..982) /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /note="Distal ubiquitin recognition interface [polypeptide binding]; other site" /db_xref="CDD:163697" misc_feature order(722..724,806..808,815..820,824..826,830..835, 980..988) /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /note="Proximal ubiquitin recognition interface [active]" /db_xref="CDD:163697" misc_feature order(800..802,806..808,839..841) /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /note="Zinc-binding site [ion binding]; other site" /db_xref="CDD:163697" exon 540..664 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /inference="alignment:Splign:2.1.0" exon 665..802 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /inference="alignment:Splign:2.1.0" exon 803..915 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /inference="alignment:Splign:2.1.0" exon 916..1015 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /inference="alignment:Splign:2.1.0" exon 1016..1332 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /inference="alignment:Splign:2.1.0" regulatory 1307..1312 /regulatory_class="polyA_signal_sequence" /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /note="hexamer: AATAAA" polyA_site 1327 /gene="Stambpl1" /gene_synonym="1700095N21Rik; 8230401J17Rik; ALMalpha; AMSH-FP" /note="major polyA site" ORIGIN
accacgtcttgggctacagaatttaacatttgagtacacagcagcaccaaaccaggtcccaacggatttgctgctttgtctctttgctttgaaggttgctggctctaccacctcttacttcacatcgatctctctctacctccgcaaacagtctcagagcgggaagcctggctagcatgagaacaaatataaagccgaaattctcaaaaagttggaacatcagagactgatagaggcagagcgccagcggatagctcagatgcgccagcagcaactagagtctgaacagttcctgttttttgaagaccaactcaagaagcaggagttggctcgaggccagattcgaggtcaggactctccggtgttgtctgagcagactgacggaagtgcgctgtcctgcttttccacccaccagagcaactctctgaggaacgcatttgcagatcaccctcataaaagtgatggaagcaatttcgctaactactctcctcccgtgaacagggccctaaagccagcagccaccctgagtgctgttcagaatttggtggttgaagggctgaggtgtgtagttttatcaagagatctttgccataaatttctgctgctggctgactctaacacagtgagaggaatagagacctgtgggatcctctgtggaaaactgacacacaatgaattcaccattactcatgtggttgtgccaaagcagtctgctggcccagactattgcgatgtggagaacgtcgaagaattattcaatgttcaggatcaacatggtctcctcacactgggatggatccatacacaccccacgcaaacggcattcctgtccagtgtggatctccacactcactgctcctaccagcttatgttgccagaggccattgccattgtgtgttccccaaagcataaagacaccggcattttcaggctcaccaacgctggcatgcttgaggtttctacttgtaaaaagaagggcttccatcctcacaccaaggaccccaagctgttcagtatatgcagccatgtgttagtaaaggacataaaaacaactgtgttggatctgaggtgacatgccctaactgtaagaccatctgtggacgtgtgtgactgccgaatttcttatgatgttttcagaagtgactgatattttatatttatatattttagaccaaaactttgatatttattgttcttgcacattttgaagtttccttttttttttttttttgggttgctgcgtctcaaacgaggccacgtggtgttcagcctatacctattaatatacccaagtgatgccatcggaaataaattgtgctgcaaataacaagc
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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