2024-09-29 11:16:01, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001356396 1075 bp mRNA linear ROD 07-AUG-2023 DEFINITION Mus musculus claudin 34B4 (Cldn34b4), transcript variant 2, mRNA. ACCESSION NM_001356396 XM_006528214 VERSION NM_001356396.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1075) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 REFERENCE 2 (bases 1 to 1075) AUTHORS Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002) PUBMED 12477932 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL672017.10 and BC147626.1. On Oct 4, 2017 this sequence version replaced XM_006528214.1. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC147626.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-102 AL672017.10 108453-108554 103-984 BC147626.1 1-882 985-1075 AL672017.10 112992-113082 FEATURES Location/Qualifiers source 1..1075 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="X" /map="X 38.3 cM" gene 1..1075 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /note="claudin 34B4" /db_xref="GeneID:619294" /db_xref="MGI:MGI:3588232" exon 1..142 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /inference="alignment:Splign:2.1.0" exon 143..209 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /inference="alignment:Splign:2.1.0" exon 210..1075 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /inference="alignment:Splign:2.1.0" misc_feature 214..216 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /note="upstream in-frame stop codon" CDS 235..870 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /codon_start=1 /product="claudin 34B4" /protein_id="NP_001343325.1" /db_xref="CCDS:CCDS53116.1" /db_xref="GeneID:619294" /db_xref="MGI:MGI:3588232" /translation="
MLIKNRCNSQMGGFALTTVAWLICCISIGLPQWRVWHFQDPVVFKSTTAFVGMWRVCTLQYDEDFRNMRICHQYNYHDTFLPLNIRMIQQLLLVSSFFGLVGKVTTIIALWNVCQGRVHRKATYNPFGLSGILNIISSSFICLAILINYVSIIFQEGIIFPPSFNIPSQPDTQEIGSAMALAFIAAVLFLLSGTILLTSNFPVDKPVCSKY"
misc_feature 289..828 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN
agaattagaagaagtccagtattaagccagactcagagctgatggtaaaggaacctcaaaggacaagtgagaggacccctttccttgtcagctccactggactccatacctgactgccctgccacataatctaccaccatcattgctgtattgcacatagccaatgtgaaggaaattataaagaaggtgaaaactaagtttgctgcaggttgctgaatattcactgtgatcatcatgttaatcaaaaaccgttgcaatagccaaatgggaggctttgctttgacaactgtggcttggctaatttgctgtatctccataggcttacctcagtggcgtgtgtggcacttccaagaccctgtggtctttaagtctaccacagcatttgttggcatgtggagagtctgtactctccagtatgatgaggactttaggaatatgagaatatgtcaccaatacaactaccatgataccttccttccattgaatatcagaatgatccaacaattgctactggtctctagcttttttggactggttggaaaagtcaccaccattattgccctttggaatgtgtgtcaggggagagtacatagaaaggccacttacaatccatttggtctatctggaattctgaacatcatttctagcagctttatttgccttgccatattgattaattatgtatctatcatattccaggagggtataatatttccaccatctttcaatataccttcccagccagacactcaggaaattggaagtgccatggccttggcatttatagctgcagttttatttctattaagtggcacaattttgcttacttcaaattttcctgtagacaagccagtatgttctaaatattaaaagtaaatttctactttacataacattcaaaatccaaagttatctgtaatgaaggaatgtgtctacataaattttcaaagaactcaatttagcctttgaggaaaaatgaccatgttggtctcttatattttctgtattcttgtttgtttcattacttcattgctggattatggactttcaaaaaataaaatctaatccataatcc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]