LOCUS       NM_001347262            1037 bp    mRNA    linear   ROD 05-AUG-2023
DEFINITION  Mus musculus Fanconi anemia core complex associated protein 20
            (Faap20), transcript variant 3, mRNA.
ACCESSION   NM_001347262 XM_006539119
VERSION     NM_001347262.1
KEYWORDS    RefSeq.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Zhang T, Wilson AF, Mahmood Ali A, Namekawa SH, Andreassen PR,
            Ruhikanta Meetei A and Pang Q.
  TITLE     Loss of Faap20 Causes Hematopoietic Stem and Progenitor Cell
            Depletion in Mice Under Genotoxic Stress
  JOURNAL   Stem Cells 33 (7), 2320-2330 (2015)
   PUBMED   25917546
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Lin Q, Donahue SL, Moore-Jarrett T, Cao S, Osipovich AB and Ruley
            HE.
  TITLE     Mutagenesis of diploid mammalian genes by gene entrapment
  JOURNAL   Nucleic Acids Res 34 (20), e139 (2006)
   PUBMED   17062627
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AL670413.19.
            
            On Nov 19, 2016 this sequence version replaced XM_006539119.2.
            
            Transcript Variant: This variant (3) uses an alternate in-frame
            splice junction compared to variant 1. The resulting isoform (b)
            has the same N- and C-termini but is shorter compared to isoform a.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BF607856.1, CA457860.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849374, SAMN00849375
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-97                AL670413.19        208618-208714
            98-203              AL670413.19        209197-209302
            204-484             AL670413.19        209408-209688
            485-1037            AL670413.19        214787-215339
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="4"
                     /map="4 86.17 cM"
     gene            1..1037
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /note="Fanconi anemia core complex associated protein 20"
                     /db_xref="GeneID:67513"
                     /db_xref="MGI:MGI:1914763"
     exon            1..97
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             36..557
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /note="isoform b is encoded by transcript variant 3;
                     likely orthologue of H. sapiens chromosome 1 open reading
                     frame 86 (C1orf86); Fanconi anemia-associated protein of
                     20 kDa; FANCA-associated protein of 20 kDa"
                     /codon_start=1
                     /product="Fanconi anemia core complex-associated protein
                     20 isoform b"
                     /protein_id="NP_001334191.1"
                     /db_xref="CCDS:CCDS84835.1"
                     /db_xref="GeneID:67513"
                     /db_xref="MGI:MGI:1914763"
                     /translation="

MEEERRLRGRLSRRRPPAGGGKSEPWAALLRSTVSGTADWTPNRQPLPPLPAFPSQESLPDPESTVPPEAFTVGSKTFSWTPLPPALRGSGSSRHLFCEPEGSLGSPTPSLKGCPALNSGRTPSAQECVPVQSPLALLSCPLCQKAFDPKLTQLDVDSHLAQCLAECTEDVVW"

     misc_feature    96..431
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /note="FAAP20 FANCA interaction domain; Region:
                     FANCA_interact; pfam15751"
                     /db_xref="CDD:434907"
     misc_feature    444..548
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /note="Ubiquitin-binding zinc-finger; Region: UBZ_FAAP20;
                     pfam15750"
                     /db_xref="CDD:434906"
     exon            98..203
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            204..484
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /inference="alignment:Splign:2.1.0"
     exon            485..1037
                     /gene="Faap20"
                     /gene_synonym="2610002J02Rik"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

aagtctcacttccgccggacgctgtttggagaaggatggaggaggagcggagactgcgggggaggctgagccgtcggaggccgcccgcggggggcggtaagagtgagccctgggctgctctgttgcgcagcaccgtgagcgggaccgcggattggaccccgaaccgtcagccattaccaccgctgcctgcttttcccagccaggagtctctacctgacccagagtccactgtgcctcctgaggccttcactgtgggatccaagactttctcctggacgcctttgccacctgcccttcgtggctctggaagctcccgccacctgttctgtgaacctgaaggctccctggggtcacctactccatccctgaaaggatgccctgcactaaattctggtcgaactcccagcgcccaggagtgtgtgcctgtgcagagtccacttgcgttgctgagttgcccgttgtgccagaaggcgtttgacccgaagctgacccagctagatgtggatagccaccttgctcagtgcttggctgagtgcaccgaagatgtggtgtggtgagcatcagggtgccttgctgtatctccttcaaacctacacaccgacattggatgtggcttctgagacatcgtcgtgtggacacctgagtattggctccttctggttttgttcatgggcattggacataatgctggtcactgacagcaggcagcactgatcctctgtggactcatcttcattgtcagcctgacaggatgtggaatcacccaggagacacatctcaggtgtgcctgtgaaaccgttcccagagattacctgggacaggaagtcccagctgaatgtgggtggcaccgtggcctggggtcccactgattgaaaagggaaaatggagaaattgagctgtttcctcactggggatgtgatgagatgcaccgctcgcctgctacggcagccatagctacttttgctactgtgccctccttgccacagggactgtaccttaactgtgagccagaataaattttaagttgctttccagta

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