LOCUS       NM_001201395            1003 bp    mRNA    linear   ROD 07-AUG-2023
DEFINITION  Mus musculus claudin 34D (Cldn34d), mRNA.
ACCESSION   NM_001201395 XM_135954
VERSION     NM_001201395.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Skarnes WC, Rosen B, West AP, Koutsourakis M, Bushell W, Iyer V,
            Mujica AO, Thomas M, Harrow J, Cox T, Jackson D, Severin J, Biggs
            P, Fu J, Nefedov M, de Jong PJ, Stewart AF and Bradley A.
  TITLE     A conditional knockout resource for the genome-wide study of mouse
            gene function
  JOURNAL   Nature 474 (7351), 337-342 (2011)
   PUBMED   21677750
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK015525.1 and AL691503.6.
            
            On Jan 18, 2011 this sequence version replaced XM_135954.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK015525.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN00849384 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-9                 AK015525.1         2-10
            10-10               AL691503.6         118551-118551       c
            11-1003             AK015525.1         12-1004
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /strain="C57BL/6"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 38.3 cM"
     gene            1..1003
                     /gene="Cldn34d"
                     /gene_synonym="4930468A15Rik"
                     /note="claudin 34D"
                     /db_xref="GeneID:74987"
                     /db_xref="MGI:MGI:1922237"
     exon            1..140
                     /gene="Cldn34d"
                     /gene_synonym="4930468A15Rik"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    130..132
                     /gene="Cldn34d"
                     /gene_synonym="4930468A15Rik"
                     /note="upstream in-frame stop codon"
     exon            141..1003
                     /gene="Cldn34d"
                     /gene_synonym="4930468A15Rik"
                     /inference="alignment:Splign:2.1.0"
     CDS             169..801
                     /gene="Cldn34d"
                     /gene_synonym="4930468A15Rik"
                     /codon_start=1
                     /product="uncharacterized protein LOC74987"
                     /protein_id="NP_001188324.1"
                     /db_xref="CCDS:CCDS53117.1"
                     /db_xref="GeneID:74987"
                     /db_xref="MGI:MGI:1922237"
                     /translation="

MARKHAKWQIGGFAAGAIAWFLCIVSMGLPQWRVWFFQDPMDSKHGMTLVGMWKTCIYHQESNSTFNRMCYKYTYQDDFIPLDIRVAQHLLLIASFLGIIATISVIIALWKLNSGRLRKKATFNPFRLPGILNIIASSFVFLSILYNYLSIIRKDGIAFPPSFHTPSFPDHQKIGTALAMATLSCFLFLVGGIIPLSFTLPPRSRVRYTI"

     misc_feature    217..759
                     /gene="Cldn34d"
                     /gene_synonym="4930468A15Rik"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      

accacacagttgactgtaaagtcactaaccaggcttgaaggacactagggaggttgtattctccttagcactacccgttgagatatctccaaattctgtcacataaggagccacaaatccacttggagatagcaacatagtttccaagagattactgtcaccgtgataatggccagaaagcatgccaaatggcagataggaggttttgctgcaggcgccatagcatggttcctttgtattgtctctatgggcctccctcaatggcgagtatggttctttcaagatcccatggattccaagcatggcatgaccttagtaggcatgtggaaaacctgcatttaccaccaggaaagcaattccacctttaaccggatgtgttacaaatacacctaccaggatgacttcatccctctggatattcgagttgcccaacatctgctactcatcgcaagctttcttggcattattgccacaatctctgtcatcattgctctttggaaattgaactcagggagactccggaagaaagctaccttcaatccattccgtcttccaggaattctgaacatcattgctagcagctttgtctttctttccatcttgtacaattacttatcgatcattcgcaaggatgggattgccttccccccgtctttccacacaccctccttcccagatcatcaaaaaattggcactgcactggcaatggcaactctatcctgtttcttatttctagtgggtggaataattcccctttctttcactcttcccccacgttcccgagtgcgctatactatttaaaagtaaatttgcaacttaaagacttgaaaatctaaaattaccaggagttatcgcaggccttcttcagatacatacttaaaatttccagattcaaaaccatgcccaatgatgacaagtggccatcctattatttcctgccttgtggtagcttcagtagttcaattggcttatggattttcattaaataaaatatttcccaatt

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