2024-09-28 11:16:29, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001184969 648 bp mRNA linear ROD 07-AUG-2023 DEFINITION Mus musculus reproductive homeobox 3E (Rhox3e), mRNA. ACCESSION NM_001184969 VERSION NM_001184969.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 648) AUTHORS MacLean,J.A. 2nd, Lorenzetti,D., Hu,Z., Salerno,W.J., Miller,J. and Wilkinson,M.F. TITLE Rhox homeobox gene cluster: recent duplication of three family members JOURNAL Genesis 44 (3), 122-129 (2006) PUBMED 16496311 REFERENCE 2 (bases 1 to 648) AUTHORS Morris L, Gordon J and Blackburn CC. TITLE Identification of a tandem duplicated array in the Rhox alpha locus on mouse chromosome X JOURNAL Mamm Genome 17 (2), 178-187 (2006) PUBMED 16465597 REFERENCE 3 (bases 1 to 648) AUTHORS Maclean JA 2nd, Chen MA, Wayne CM, Bruce SR, Rao M, Meistrich ML, Macleod C and Wilkinson MF. TITLE Rhox: a new homeobox gene cluster JOURNAL Cell 120 (3), 369-382 (2005) PUBMED 15707895 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL808133.17. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN00849384, SAMN01164134 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-181 AL808133.17 26773-26953 182-551 AL808133.17 27204-27573 552-597 AL808133.17 29451-29496 598-648 AL808133.17 30645-30695 FEATURES Location/Qualifiers source 1..648 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="X" /map="X 21.84 cM" gene 1..648 /gene="Rhox3e" /gene_synonym="Rhox3.5; Rhox3d" /note="reproductive homeobox 3E" /db_xref="GeneID:100135657" /db_xref="MGI:MGI:3770274" CDS 1..648 /gene="Rhox3e" /gene_synonym="Rhox3.5; Rhox3d" /note="reproductive homeobox 3D" /codon_start=1 /product="reproductive homeobox 3E" /protein_id="NP_001171898.1" /db_xref="CCDS:CCDS53056.1" /db_xref="GeneID:100135657" /db_xref="MGI:MGI:3770274" /translation="
MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEEGKNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL"
misc_feature 463..633 /gene="Rhox3e" /gene_synonym="Rhox3.5; Rhox3d" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(463..477,481..483,532..534,550..552,589..591, 595..600,607..612,616..624,628..633) /gene="Rhox3e" /gene_synonym="Rhox3.5; Rhox3d" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(469..471,478..480,598..600,607..612,619..621) /gene="Rhox3e" /gene_synonym="Rhox3.5; Rhox3d" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..181 /gene="Rhox3e" /gene_synonym="Rhox3.5; Rhox3d" /inference="alignment:Splign:2.1.0" exon 182..551 /gene="Rhox3e" /gene_synonym="Rhox3.5; Rhox3d" /inference="alignment:Splign:2.1.0" exon 552..597 /gene="Rhox3e" /gene_synonym="Rhox3.5; Rhox3d" /inference="alignment:Splign:2.1.0" exon 598..648 /gene="Rhox3e" /gene_synonym="Rhox3.5; Rhox3d" /inference="alignment:Splign:2.1.0" ORIGIN
atgagcatgaagccagaacgttccatctctaactggatacatagtaatgtggaacgggctggaagaaatctcttccaggtcaacggtcaccgctctgctctattaccggaactacctcaggattaccacagagcttcaaggtcagtcaacggatgtgagactaaaatggacagcacccaaggtaccaaggttttgccggctgaagagggaaaaaatgaagaagatggaggacaggtggagtcggcattgggagccacagccgcaaggggtagaggaaaagaagcattaaatggagagagtcccgccgctgctggcactgcaggccttgtagaggaagacaggaacaaggaagatggtggcaccaagggaggtgagaagaatgagcaggaagtgagggagcagattcctgagcatgttgaaggagagagtgaccaggctgaagcgccaaggcaggtgccacgacgtcgattgcaccatagattcacccagtggcagctggacgaactggagagaattttccggatgaattattttctcagtctagaagcaagaaaacaactggcccgatggatgggtgtgaatgaagccatagtgaagagatggtttcagaagaggagagaacaatacaggtggtataagaggctataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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