2024-09-28 11:15:42, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001114157 1053 bp mRNA linear ROD 07-AUG-2023 DEFINITION Mus musculus reproductive homeobox 3H (Rhox3h), mRNA. ACCESSION NM_001114157 XM_885355 VERSION NM_001114157.1 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1053) AUTHORS MacLean,J.A. 2nd, Lorenzetti,D., Hu,Z., Salerno,W.J., Miller,J. and Wilkinson,M.F. TITLE Rhox homeobox gene cluster: recent duplication of three family members JOURNAL Genesis 44 (3), 122-129 (2006) PUBMED 16496311 REFERENCE 2 (bases 1 to 1053) AUTHORS Morris L, Gordon J and Blackburn CC. TITLE Identification of a tandem duplicated array in the Rhox alpha locus on mouse chromosome X JOURNAL Mamm Genome 17 (2), 178-187 (2006) PUBMED 16465597 REFERENCE 3 (bases 1 to 1053) AUTHORS Maclean JA 2nd, Chen MA, Wayne CM, Bruce SR, Rao M, Meistrich ML, Macleod C and Wilkinson MF. TITLE Rhox: a new homeobox gene cluster JOURNAL Cell 120 (3), 369-382 (2005) PUBMED 15707895 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL808133.17. On Feb 1, 2008 this sequence version replaced XM_885355.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: partial sample support SAMN00849384, SAMN01164134 [ECO:0000350] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-62 AL808133.17 148501-148562 c 63-211 AL808133.17 141784-141932 c 212-401 AL808133.17 141409-141598 c 402-771 AL808133.17 140789-141158 c 772-817 AL808133.17 138871-138916 c 818-1053 AL808133.17 137486-137721 c FEATURES Location/Qualifiers source 1..1053 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="X" /map="X 21.96 cM" gene 1..1053 /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /note="reproductive homeobox 3H" /db_xref="GeneID:434758" /db_xref="MGI:MGI:3704137" exon 1..62 /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /inference="alignment:Splign:2.1.0" exon 63..211 /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /inference="alignment:Splign:2.1.0" exon 212..401 /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /inference="alignment:Splign:2.1.0" CDS 221..868 /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /note="reproductive homeobox 3G" /codon_start=1 /product="reproductive homeobox 3H" /protein_id="NP_001107629.1" /db_xref="CCDS:CCDS53060.1" /db_xref="GeneID:434758" /db_xref="MGI:MGI:3704137" /translation="
MSMKPERSISNWIHSNVEPAGRNLFQVNGHRSALLPELPQDYHRASRSVNGCETKMDSTQGTKVLPAEESRNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL"
misc_feature 683..853 /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(683..697,701..703,752..754,770..772,809..811, 815..820,827..832,836..844,848..853) /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(689..691,698..700,818..820,827..832,839..841) /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 402..771 /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /inference="alignment:Splign:2.1.0" exon 772..817 /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /inference="alignment:Splign:2.1.0" exon 818..1053 /gene="Rhox3h" /gene_synonym="EG434758; Rhox3.8; Rhox3g" /inference="alignment:Splign:2.1.0" ORIGIN
gcaaatttacaagagagatgatgcaggacccaaggagaaacagcagtctcttccaaactcagggaatcaatgtggggcactagaccaagaggtagctctacaaacattttcctcaagggctccagagttactgggagatattttcttgctccccacaacttggcttctacagttgaccaccatcccctcggtaggaagaaaattcaataagcaacaggtgatgagcatgaagccagaacgttccatctctaactggatacatagtaatgtggaaccggctggaagaaatctcttccaggtcaacggtcaccgctctgctctattaccggaactacctcaggattaccacagagcttcaaggtcagtcaacggatgtgagactaaaatggacagcacccaaggtaccaaggttttgccggctgaagagtcaagaaatgaggaagatggaggacaggtggagtcggcattgggagccacagccgcaaggggtagaggaaaagaagcattaaatggagagagtcccgccgccgctggcactgcaggccttgtagaggaagataggaacaaggaagatggtggcaccaagggaggtgagaagaatgagcaggaagtgagggagcagattcctgagcatgttgaaggagagagtgaccaggctgaagcgccaaggcaggtaccacgacgtcgattgcaccatagattcacccagtggcagctggacgaactggagagaattttccggatgaattattttctcagtctagaagcaagaaaacaactggcccgatggatgggtgtgaatgaagccatagtgaagagatggtttcagaagaggagagaacaatacaggtggtataagaggctataaggtctcagaagttctcctcctgcttctcagaacatctttcctgaagactgtggaagaaccctgaagtgccactatcgcctaggcaacatagagagaggaattgttttcttctcctaacgttatgttattaaactcttatatctgaagcgattatatttcaataacaatatgaattttcaatataa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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