2024-09-28 11:15:16, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001102457 830 bp mRNA linear ROD 07-AUG-2023 DEFINITION Mus musculus reproductive homeobox 3C (Rhox3c), mRNA. ACCESSION NM_001102457 VERSION NM_001102457.4 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 830) AUTHORS MacLean,J.A. 2nd, Lorenzetti,D., Hu,Z., Salerno,W.J., Miller,J. and Wilkinson,M.F. TITLE Rhox homeobox gene cluster: recent duplication of three family members JOURNAL Genesis 44 (3), 122-129 (2006) PUBMED 16496311 REFERENCE 2 (bases 1 to 830) AUTHORS Morris L, Gordon J and Blackburn CC. TITLE Identification of a tandem duplicated array in the Rhox alpha locus on mouse chromosome X JOURNAL Mamm Genome 17 (2), 178-187 (2006) PUBMED 16465597 REFERENCE 3 (bases 1 to 830) AUTHORS Maclean JA 2nd, Chen MA, Wayne CM, Bruce SR, Rao M, Meistrich ML, Macleod C and Wilkinson MF. TITLE Rhox: a new homeobox gene cluster JOURNAL Cell 120 (3), 369-382 (2005) PUBMED 15707895 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL954686.9. On Dec 5, 2013 this sequence version replaced NM_001102457.3. Sequence Note: The RefSeq transcript and protein were derived from genomic sequence to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on alignments. ##Evidence-Data-START## RNAseq introns :: single sample supports all introns SAMN00849384, SAMN01766820 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on single protein-coding transcript ##RefSeq-Attributes-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-181 AL954686.9 25711-25891 182-551 AL954686.9 26142-26511 552-597 AL954686.9 28381-28426 598-830 AL954686.9 29572-29804 FEATURES Location/Qualifiers source 1..830 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="X" /map="X 21.76 cM" gene 1..830 /gene="Rhox3c" /gene_synonym="EG665203; Rhox3.3; Rhox3b" /note="reproductive homeobox 3C" /db_xref="GeneID:100135654" /db_xref="MGI:MGI:3770268" CDS 1..648 /gene="Rhox3c" /gene_synonym="EG665203; Rhox3.3; Rhox3b" /note="reproductive homeobox 3B" /codon_start=1 /product="reproductive homeobox 3C" /protein_id="NP_001095927.3" /db_xref="CCDS:CCDS53054.1" /db_xref="GeneID:100135654" /db_xref="MGI:MGI:3770268" /translation="
MSMKPERSISNWIHSNVERAGRNLFQVNGHRSALLPELPQDYHRASRSVYGCETKMDSTQGTKVLPAEEARNEEDGGQVESALGATAARGRGKEALNGESPAAAGTAGLVEEDRNKEDGGTKGGEKNEQEVREQIPEHVEGESDQAEAPRQVPRRRLHHRFTQWQLDELERIFRMNYFLSLEARKQLARWMGVNEAIVKRWFQKRREQYRWYKRL"
misc_feature 463..633 /gene="Rhox3c" /gene_synonym="EG665203; Rhox3.3; Rhox3b" /note="Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner; Region: homeodomain; cd00086" /db_xref="CDD:238039" misc_feature order(463..477,481..483,532..534,550..552,589..591, 595..600,607..612,616..624,628..633) /gene="Rhox3c" /gene_synonym="EG665203; Rhox3.3; Rhox3b" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238039" misc_feature order(469..471,478..480,598..600,607..612,619..621) /gene="Rhox3c" /gene_synonym="EG665203; Rhox3.3; Rhox3b" /note="specific DNA base contacts [nucleotide binding]; other site" /db_xref="CDD:238039" exon 1..181 /gene="Rhox3c" /gene_synonym="EG665203; Rhox3.3; Rhox3b" /inference="alignment:Splign:2.1.0" exon 182..551 /gene="Rhox3c" /gene_synonym="EG665203; Rhox3.3; Rhox3b" /inference="alignment:Splign:2.1.0" exon 552..597 /gene="Rhox3c" /gene_synonym="EG665203; Rhox3.3; Rhox3b" /inference="alignment:Splign:2.1.0" exon 598..830 /gene="Rhox3c" /gene_synonym="EG665203; Rhox3.3; Rhox3b" /inference="alignment:Splign:2.1.0" ORIGIN
atgagcatgaagccagaacgttccatctctaactggatacatagtaatgtggaacgggctggaagaaatctcttccaggtcaacggtcaccgctctgctctattaccggaactacctcaggattaccacagagcttcaagatcagtctacggatgtgagactaaaatggacagcacccaaggtaccaaggttttgccggctgaagaggcaagaaatgaggaagatggaggacaggtggagtcggcattgggagccacagccgcaaggggtagaggaaaagaagcattaaatggagagagtcccgccgctgctggcactgcaggccttgtagaggaagacaggaacaaggaagatggtggcaccaagggaggtgagaagaatgagcaggaagtgagggagcagattcctgagcatgttgaaggagagagtgaccaggctgaagcaccaaggcaggtgccacgacgtcgattgcaccatagattcacccagtggcagctggacgaactggagagaattttccggatgaattattttctcagtctagaagcaagaaaacaactggcccgatggatgggtgtgaatgaagccatagtgaagagatggtttcagaagaggagagaacaatacaggtggtataagaggctataaggtctcagaagttctcctcctgcttctcagaacatctttcctgaagactgtggaggaaccctgcagtgccactatcgccaaggcaacatagagagaggaatttttttcgtttcctaacgatatgttattaaactcttatatctgaagcgattatatttcaataacaatatgaattttcaata
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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