LOCUS       NM_001097980            1081 bp    mRNA    linear   ROD 04-AUG-2023
DEFINITION  Mus musculus claudin 34B1 (Cldn34b1), mRNA.
ACCESSION   NM_001097980 XM_001475498
VERSION     NM_001097980.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX005164.9.
            
            On Feb 7, 2008 this sequence version replaced XM_001475498.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN00849384
                              [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               BX005164.9         135984-136120       c
            138-1081            BX005164.9         132656-133599       c
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Mus musculus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10090"
                     /chromosome="X"
                     /map="X 72.38 cM"
     gene            1..1081
                     /gene="Cldn34b1"
                     /gene_synonym="EG546400; Gm16390"
                     /note="claudin 34B1"
                     /db_xref="GeneID:100040937"
                     /db_xref="MGI:MGI:3648403"
     exon            1..137
                     /gene="Cldn34b1"
                     /gene_synonym="EG546400; Gm16390"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    85..87
                     /gene="Cldn34b1"
                     /gene_synonym="EG546400; Gm16390"
                     /note="upstream in-frame stop codon"
     exon            138..1081
                     /gene="Cldn34b1"
                     /gene_synonym="EG546400; Gm16390"
                     /inference="alignment:Splign:2.1.0"
     CDS             163..792
                     /gene="Cldn34b1"
                     /gene_synonym="EG546400; Gm16390"
                     /codon_start=1
                     /product="uncharacterized protein LOC100040937 precursor"
                     /protein_id="NP_001091449.1"
                     /db_xref="CCDS:CCDS53231.1"
                     /db_xref="GeneID:100040937"
                     /db_xref="MGI:MGI:3648403"
                     /translation="

MPLKKCHGQMGGFALTTVAWLLCCISTGLPQWQVWHYEDPVVLKPTVALVGMWRACVFHTDRNSSNTRVCYQYNYDGSIPLYIRGNQHLLLVSSFLGLFGKITTIIALSNVHMGRVRRNATCNPFRLSGILNIIASSFLYLAVLFNYIAIMSKWGIAFPPSFNLPFQPDTRKMGSAMALAIIAAVLFQLSGTICLSSNLDIGKMPRSKM"

     sig_peptide     163..252
                     /gene="Cldn34b1"
                     /gene_synonym="EG546400; Gm16390"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     misc_feature    214..750
                     /gene="Cldn34b1"
                     /gene_synonym="EG546400; Gm16390"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      

agaggtggtggtgaagctagcaaggagtctcaaagtcctagtgagaggaccaatttccttgtcgactctactgcctcgcataactgactgccaagcaacatcatctactatcagttcacttgtgaattgtgtctctgttctcaagtattcactgccgtcatcatgccgttgaaaaagtgccatggccaaatgggaggttttgctttgaccactgtggcctggctactttgctgcatatccacaggccttcctcagtggcaagtgtggcactatgaagatcctgtggtcctcaagcctacagtggctttagtgggcatgtggagagcctgcgttttccacaccgacagaaactccagcaacaccagagtatgttaccaatacaactacgatggctccattcctttgtatattcggggaaaccagcacttgctgctggtttctagctttcttgggctttttgggaaaatcaccaccattattgctctttcgaatgtgcatatgggaagagtacggaggaatgccacctgcaatcctttcagactttcaggcatactgaacatcattgctagcagctttctttaccttgctgttttgttcaattacatagccatcatgagcaaatgggggattgccttcccaccatctttcaatttgcctttccagccagacactcggaagatgggaagtgccatggctttggcaattatagctgcagttttatttcaactaagtggcacaatttgcctttcttcaaatttagacataggcaagatgccccgatccaaaatgtaaatcgctaccttacatagccttgaaatgccagcaaagataatgagtattcttcacatgtctacacaaattttcaaagaacttgaaaggatgccaattgtggcctgcggggaaaaaataatccagttgactttctcttatcttttttttttggcttcttttgtgtttccttaatgcattatttggattgtgggcttttattaaataaaatattattttatgggtagtattgatttatgttctacttgctgtcaacagtagcaaataatcaataaacctgatccatattcaa

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