2024-09-29 11:19:09, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001033799 1103 bp mRNA linear ROD 04-AUG-2023 DEFINITION Mus musculus claudin 34B4 (Cldn34b4), transcript variant 1, mRNA. ACCESSION NM_001033799 VERSION NM_001033799.2 KEYWORDS RefSeq; RefSeq Select. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1103) AUTHORS Gaudet P, Livstone MS, Lewis SE and Thomas PD. TITLE Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium JOURNAL Brief Bioinform 12 (5), 449-462 (2011) PUBMED 21873635 REFERENCE 2 (bases 1 to 1103) AUTHORS Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T, Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL, Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P, Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH, Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW, Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW, Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U, Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA. CONSRTM Mammalian Gene Collection Program Team TITLE Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences JOURNAL Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002) PUBMED 12477932 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK132827.1. On Apr 6, 2007 this sequence version replaced NM_001033799.1. ##Evidence-Data-START## Transcript exon combination :: AK132827.1, BC147629.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN00849384 [ECO:0000348] ##Evidence-Data-END## ##RefSeq-Attributes-START## RefSeq Select criteria :: based on longest protein ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1103 AK132827.1 2-1104 FEATURES Location/Qualifiers source 1..1103 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="X" /map="X 38.3 cM" gene 1..1103 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /note="claudin 34B4" /db_xref="GeneID:619294" /db_xref="MGI:MGI:3588232" exon 1..170 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /inference="alignment:Splign:2.1.0" exon 171..237 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /inference="alignment:Splign:2.1.0" exon 238..1103 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /inference="alignment:Splign:2.1.0" misc_feature 242..244 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /note="upstream in-frame stop codon" CDS 263..898 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /codon_start=1 /product="claudin 34B4" /protein_id="NP_001028971.1" /db_xref="CCDS:CCDS53116.1" /db_xref="GeneID:619294" /db_xref="MGI:MGI:3588232" /translation="
MLIKNRCNSQMGGFALTTVAWLICCISIGLPQWRVWHFQDPVVFKSTTAFVGMWRVCTLQYDEDFRNMRICHQYNYHDTFLPLNIRMIQQLLLVSSFFGLVGKVTTIIALWNVCQGRVHRKATYNPFGLSGILNIISSSFICLAILINYVSIIFQEGIIFPPSFNIPSQPDTQEIGSAMALAFIAAVLFLLSGTILLTSNFPVDKPVCSKY"
misc_feature 317..856 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" regulatory 1082..1087 /regulatory_class="polyA_signal_sequence" /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /note="putative" polyA_site 1103 /gene="Cldn34b4" /gene_synonym="4930428D18Rik" /note="putative" ORIGIN
agaattagaagaagtccagtattaagccagactcagagctgatggtaaaggaacctcaaaggacaagtgagaggacccctttccttgtcagctccactggactccatacctgactgccctgccacataatctaccaccatcagtgagttcacttgaagacagtatctctgttgctgtattgcacatagccaatgtgaaggaaattataaagaaggtgaaaactaagtttgctgcaggttgctgaatattcactgtgatcatcatgttaatcaaaaaccgttgcaatagccaaatgggaggctttgctttgacaactgtggcttggctaatttgctgtatctccataggcttacctcagtggcgtgtgtggcacttccaagaccctgtggtctttaagtctaccacagcatttgttggcatgtggagagtctgtactctccagtatgatgaggactttaggaatatgagaatatgtcaccaatacaactaccatgataccttccttccattgaatatcagaatgatccaacaattgctactggtctctagcttttttggactggttggaaaagtcaccaccattattgccctttggaatgtgtgtcaggggagagtacatagaaaggccacttacaatccatttggtctatctggaattctgaacatcatttctagcagctttatttgccttgccatattgattaattatgtatctatcatattccaggagggtataatatttccaccatctttcaatataccttcccagccagacactcaggaaattggaagtgccatggccttggcatttatagctgcagttttatttctattaagtggcacaattttgcttacttcaaattttcctgtagacaagccagtatgttctaaatattaaaagtaaatttctactttacataacattcaaaatccaaagttatctgtaatgaaggaatgtgtctacataaattttcaaagaactcaatttagcctttgaggaaaaatgaccatgttggtctcttatattttctgtattcttgtttgtttcattacttcattgctggattatggactttcaaaaaataaaatctaatccataatcc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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