2024-09-28 07:18:02, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001013369 816 bp mRNA linear ROD 13-JAN-2022 DEFINITION Mus musculus prefoldin 4 (Pfdn4), transcript variant 2, mRNA. ACCESSION NM_001013369 XM_355370 VERSION NM_001013369.3 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 816) AUTHORS Ewart-Toland A, Briassouli P, de Koning JP, Mao JH, Yuan J, Chan F, MacCarthy-Morrogh L, Ponder BA, Nagase H, Burn J, Ball S, Almeida M, Linardopoulos S and Balmain A. TITLE Identification of Stk6/STK15 as a candidate low-penetrance tumor-susceptibility gene in mouse and human JOURNAL Nat Genet 34 (4), 403-412 (2003) PUBMED 12881723 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL935134.10 and AL954701.10. On Jan 13, 2022 this sequence version replaced NM_001013369.2. Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream start codon, compared to variant 2. The encoded isoform (2) is shorter at the N-terminus, compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: BC065407.1, AW990012.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMN01164134 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-172 AL935134.10 98658-98829 173-280 AL954701.10 14353-14460 281-421 AL954701.10 15164-15304 422-816 AL954701.10 17287-17681 FEATURES Location/Qualifiers source 1..816 /organism="Mus musculus" /mol_type="mRNA" /strain="C57BL/6" /db_xref="taxon:10090" /chromosome="2" /map="2 91.91 cM" gene 1..816 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="prefoldin 4" /db_xref="GeneID:109054" /db_xref="MGI:MGI:1923512" exon 1..172 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /inference="alignment:Splign:2.1.0" misc_feature 71..73 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="upstream in-frame stop codon" exon 173..280 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /inference="alignment:Splign:2.1.0" exon 281..421 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /inference="alignment:Splign:2.1.0" CDS 320..553 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="isoform 2 is encoded by transcript variant 2" /codon_start=1 /product="prefoldin subunit 4 isoform 2" /protein_id="NP_001013387.1" /db_xref="CCDS:CCDS50808.1" /db_xref="GeneID:109054" /db_xref="MGI:MGI:1923512" /translation="
MLADDDCLMIPYQIGDVFISHSQEETQEMLEDAKKTLQEEIDALESRVASIQRVLADLKVQLYAKFGSNINLEADES"
misc_feature <320..514 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="prefoldin; Region: Prefoldin; cl09111" /db_xref="CDD:471851" misc_feature 389..478 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:467481" exon 422..816 /gene="Pfdn4" /gene_synonym="0610025M10Rik; 1810063B06Rik; C-1; C1; Pfd4" /inference="alignment:Splign:2.1.0" ORIGIN
cgagctgctgacctgagctccccctgccaccccgaccggaaggaatagggaacaggggacaataggtgattaggaaacaaactatttaccagtgtgtcgtgctgtttcttcaggccacctttccaaaaaatctccagtaggctgcccagcagtggccagttggtgggtccaggctgcagaagacgtgaatgttactttcgaagatcagcaaaaaataaacaaatttgctcggaatacgagtcgaatcacagagctaaaggaggaaatagaagtgaagaagaaacatctccagaacttagaggacgcctgtgatgacatcatgctggcagatgacgactgcttaatgattccctaccagatcggagacgttttcatcagccactctcaagaagaaacacaggaaatgttagaagatgcaaagaaaactttgcaagaagagattgatgccttagagtccagagtggcgtccatccagcgggtgttagccgacctgaaggtgcagctatacgcgaaatttggcagcaacataaacctcgaggcagatgaaagctaaacattttataatactttttttttatcttgttttaataaacttgaatattgtcttaaatgataatttcccttctccaaatgaaacaaaaggaaaactttcttttttaagaattttcatttaattaatggaaacgcctattttcacatgtcttgcttatttattttatatttttaaaagaagacagtgttcatgtatgtattttgcataatgattgtatcaattttaggagctttatgtcatgttattaaaatcggttaaacagt
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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