ver.2
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Previous release (v1)
2026-09-28 02:30:48, GGRNA : RefSeq release 233 (Jan, 2026)
Summary:
Results:
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Overlapping matches are dark colored.
LOCUS XR_381516 3866 bp RNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus nrde-2 necessary for RNA interference, domain containing (Nrde2), transcript variant X2, misc_RNA. ACCESSION XR_381516 VERSION XR_381516.5 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is...
LOCUS XM_011244093 4905 bp mRNA linear ROD 07-FEB-2024 DEFINITION PREDICTED: Mus musculus nrde-2 necessary for RNA interference, domain containing (Nrde2), transcript variant X1, mRNA. ACCESSION XM_011244093 VERSION XM_011244093.4 DBLINK BioProject: PRJNA169 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record...
LOCUS NR_165261 3932 bp RNA linear ROD 22-SEP-2023 DEFINITION Mus musculus nrde-2 necessary for RNA interference, domain containing (Nrde2), transcript variant 5, non-coding RNA. ACCESSION NR_165261 XR_001780446 VERSION NR_165261.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
LOCUS NR_165260 3705 bp RNA linear ROD 22-SEP-2023 DEFINITION Mus musculus nrde-2 necessary for RNA interference, domain containing (Nrde2), transcript variant 4, non-coding RNA. ACCESSION NR_165260 XR_381517 VERSION NR_165260.1 KEYWORDS RefSeq. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was...
synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1600..2197 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2197) AUTHORS Ma Y, Ren Y and Guan J. TITLE Knockdown of GC binding factor 2 by RNA interference inhibits invasion and migration of vascular smooth muscle cells JOURNAL Mol Med Rep 20 (2), 1781-1789 (2019) PUBMED 31257544 REMARK GeneRIF: The inhibition of vascular smooth muscle cells proliferation and migration by knockdown of GCF2 by RNA interference was mediated by the PI3K/AKT signaling...
synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 1597..2194 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 2194) AUTHORS Ma Y, Ren Y and Guan J. TITLE Knockdown of GC binding factor 2 by RNA interference inhibits invasion and migration of vascular smooth muscle cells JOURNAL Mol Med Rep 20 (2), 1781-1789 (2019) PUBMED 31257544 REMARK GeneRIF: The inhibition of vascular smooth muscle cells proliferation and migration by knockdown of GCF2 by RNA interference was mediated by the PI3K/AKT signaling...
synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 2132..3271 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 3271) AUTHORS Ma Y, Ren Y and Guan J. TITLE Knockdown of GC binding factor 2 by RNA interference inhibits invasion and migration of vascular smooth muscle cells JOURNAL Mol Med Rep 20 (2), 1781-1789 (2019) PUBMED 31257544 REMARK GeneRIF: The inhibition of vascular smooth muscle cells proliferation and migration by knockdown of GCF2 by RNA interference was mediated by the PI3K/AKT signaling...
synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 2135..3274 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 3274) AUTHORS Ma Y, Ren Y and Guan J. TITLE Knockdown of GC binding factor 2 by RNA interference inhibits invasion and migration of vascular smooth muscle cells JOURNAL Mol Med Rep 20 (2), 1781-1789 (2019) PUBMED 31257544 REMARK GeneRIF: The inhibition of vascular smooth muscle cells proliferation and migration by knockdown of GCF2 by RNA interference was mediated by the PI3K/AKT signaling...
synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 2211..3350 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 3350) AUTHORS Ma Y, Ren Y and Guan J. TITLE Knockdown of GC binding factor 2 by RNA interference inhibits invasion and migration of vascular smooth muscle cells JOURNAL Mol Med Rep 20 (2), 1781-1789 (2019) PUBMED 31257544 REMARK GeneRIF: The inhibition of vascular smooth muscle cells proliferation and migration by knockdown of GCF2 by RNA interference was mediated by the PI3K/AKT signaling...
synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" exon 2441..3580 /gene="Gcfc2" /gene_synonym="A130099G21; GCF2; Tcf9" /inference="alignment:Splign:2.1.0" ORIGIN // REFERENCE 1 (bases 1 to 3580) AUTHORS Ma Y, Ren Y and Guan J. TITLE Knockdown of GC binding factor 2 by RNA interference inhibits invasion and migration of vascular smooth muscle cells JOURNAL Mol Med Rep 20 (2), 1781-1789 (2019) PUBMED 31257544 REMARK GeneRIF: The inhibition of vascular smooth muscle cells proliferation and migration by knockdown of GCF2 by RNA interference was mediated by the PI3K/AKT signaling...
misc_feature 638..979 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(773..775,818..820,860..862,872..874,926..928, 947..949,953..955) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site...
misc_feature 669..1010 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(804..806,849..851,891..893,903..905,957..959, 978..980,984..986) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface [nucleotide binding]; other site...
misc_feature 1074..1415 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1209..1211,1254..1256,1296..1298,1308..1310, 1362..1364,1383..1385,1389..1391) /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="nucleic acid-binding interface [nucleotide...
linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1041..1403 /gene="Ago1" /gene_synonym="Eif2c1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1197..1199,1242..1244,1284..1286,1296..1298, 1350..1352,1371..1373,1377..1379) /gene="Ago1" /gene_synonym="Eif2c1" /note="nucleic acid...
Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1032..1394 /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1188..1190,1233..1235,1275..1277,1287..1289, 1341..1343,1362..1364,1368..1370) /gene="Ago4" /gene_synonym="5730550L01Rik; Eif2c4" /note...
domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 963..1325 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1119..1121,1164..1166,1206..1208,1218..1220, 1272..1274,1293..1295,1299..1301) /gene="Ago3" /gene_synonym="C130014L07Rik;...
domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 963..1325 /gene="Ago3" /gene_synonym="C130014L07Rik; Eif2c3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1119..1121,1164..1166,1206..1208,1218..1220, 1272..1274,1293..1295,1299..1301) /gene="Ago3" /gene_synonym="C130014L07Rik;...
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : https://172.18.8.233:20082/en/mm/%22RNA+interference%22
lang : en |
div : |
spe : mm |
query_string : "RNA interference" |
format : html |
download :
0.000 | 0.000 | search_start;
0.076 | 0.076 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Mus musculus (house mouse)?to=0&format=json
0.109 | 0.033 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=((full_search:*:RNA+interference)%7C(nt:RNA+interference)%7C(aa:RNA+interference))?source=Mus musculus (house mouse)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.110 | 0.002 | cgi_end;
GGRNA ver.2 by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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