2024-05-01 04:01:19, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054346461 1956 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens LHFPL tetraspan subfamily member 4 (LHFPL4), transcript variant X1, mRNA. ACCESSION XM_054346461 VERSION XM_054346461.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060927) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1956 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="3" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..1956 /gene="LHFPL4" /gene_synonym="GARLH4" /note="LHFPL tetraspan subfamily member 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 2 long SRA reads, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:375323" /db_xref="HGNC:HGNC:29568" /db_xref="MIM:610240" CDS 169..585 /gene="LHFPL4" /gene_synonym="GARLH4" /codon_start=1 /product="LHFPL tetraspan subfamily member 4 protein isoform X1" /protein_id="XP_054202436.1" /db_xref="GeneID:375323" /db_xref="HGNC:HGNC:29568" /db_xref="MIM:610240" /translation="
MLPSQEASKLYHEHYMRNSRAIGVLWAIFTICFAIINVVVFIQPYWVGDSVSTPKPGYFGLFHYCVGSGLAGRELTCRGSFTDFSTIPSSAFKAAAFFVLLSMVLILGCITCFSLFFFCNTATVYKICAWMQLLAGGM"
misc_feature 232..>576 /gene="LHFPL4" /gene_synonym="GARLH4" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:451326" ORIGIN
cagctcccagacgcccccagctctgccccaggccccgccctcgcgggttccttgactcagggccgcttctcgcgtgcgtccccagctcccgcccggcagcccggcgctccgtcccgggccggcggcccccgccagccgccgccgccgccggccccgcctccgggcaccatgctgccctcgcaggaggcctccaagctctaccacgagcactacatgcggaactcgcgggccatcggcgtgctgtgggccatcttcaccatctgcttcgccatcatcaacgtggtggtcttcatccagccctactgggtgggcgacagcgtgagcacccccaagcctggctacttcggcctcttccactactgcgtgggcagcgggctggcgggccgcgagctcacctgccggggctccttcaccgacttcagcaccatcccgtccagcgccttcaaggcggccgccttcttcgtgctgctctccatggtgctgatcctcggctgcatcacctgcttttcgcttttcttcttctgcaacacggctacggtctacaagatctgcgcctggatgcagctcttggcaggaggaatgtaacttttggaaatggctggaagtcactccagatcaagtatagagaatacgatgggtcatcaaattgataattgtcacttggaatgacagccaaggtgtgaggacaaagtcatgaggctggtctgtttccacaagaggacttttacaaatccagggaggaattactgcctcattggaagaattgcccaaactcctaaaaggactattttgaagaaggcagatgtggacattctaatgggcttgtttcaaattcatctcacccaactcaatttagatgtggatctttgaagagggtgggaaaggtgaactataggatatgggggatatggctccatacttctctgtggtacccagggaggtgatattatgtatttctattctatttctcctgcaaaggcaagctggaatcctcaactcatcaaccttaatttggagtctgcagatgggttgctgacctcttggctttcaaattctctgtaatctgtgtgggtttaatcctggggatttgatgaattgtccaacaacccccatataataatagaatttcaggcaccttagagatcagctccttcaaatcccaccttcccctccccctgttttagagagaggaaactgagtatagagatgggaagggcttacttgaggtcacacagctgttaagggaggaagctagttctacagccgggggtccttgacttctggcccagggcacttttgcttgcattactgccccacccatgtgggctgagggggcagttggcagagttgagcagtttattccattttgttcagagatttctgagttctctgggtgagtgactgattcactttgcttaataaagtgacaccaggccagaagccagaccactggactacgagtcttggggtgggggttcttggctgacttgggtctgtgactcaccatgcagtgttaagtaagccttttagtttaaatctcaatttcccatttgtacaataggggactgggagcaggtagataaggtgatttaaagtatctcttggccaggcatggtggctcatgcctataatcccagcactttgggaggctgaggtgggaagattgcttgaggccaggagttggagattagcctggccaacatagcaagaccctgtctctgcaaaaaataacataaaataagtaaaaaataaagtatctctttcagccctgtggggatcctgggacaactctttcatcaagatcattccattcagaaagtgataaatcagtcatcctcagaggaactgtggagaatcaaagggctctgtttttgtcagataagaattaaagtgcctgtcatatgattttgtacctgttaactttttttttaaattttgagacggagtttcactctt
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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