2024-04-27 17:48:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_054340543 1602 bp mRNA linear PRI 05-OCT-2023 DEFINITION PREDICTED: Homo sapiens spermatogenesis associated 3 (SPATA3), transcript variant X5, mRNA. ACCESSION XM_054340543 VERSION XM_054340543.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq; includes ab initio. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060926) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/02/2023 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 16% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1602 /organism="Homo sapiens" /mol_type="mRNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="2" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..1602 /gene="SPATA3" /gene_synonym="TSARG1" /note="spermatogenesis associated 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 1 long SRA read, and 93% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:130560" /db_xref="HGNC:HGNC:17884" /db_xref="MIM:619857" CDS 114..755 /gene="SPATA3" /gene_synonym="TSARG1" /codon_start=1 /product="spermatogenesis-associated protein 3 isoform X1" /protein_id="XP_054196518.1" /db_xref="GeneID:130560" /db_xref="HGNC:HGNC:17884" /db_xref="MIM:619857" /translation="
MKKVKKKRSEARRHRDSTSQHASSNSTSQQPSPESTPQQPSPESTPQQPSPESTPQHSSLETTSRQPAFQALPAPEIRRSSCCLLSPDANVKAAPQSRKAGPLIRAGPHSCSCATCPCSSACWRRLGLCHSRIFDVLLPRDWQMAPGRGLPNLLTFYREALKPSFPPPPLLLCSTENLQENPPVIVTRVLQALGTVAVALGALGAAYYITESL"
misc_feature 114..587 /gene="SPATA3" /gene_synonym="TSARG1" /note="Spermatogenesis-associated protein 3 family; Region: SPATA3; pfam15662" /db_xref="CDD:434837" ORIGIN
agctggaggcccgagccaggctcctagggcagagggcaaacggcccctccaggagggagccgggagattacgcagctccatgtaggtccacgtttaggttgggaggatctaccatgaagaaggtcaagaagaaaaggtcagaggccagacgccaccgagactccacctcccagcatgctagctccaattccacctctcagcagcctagccctgaatccacaccacagcagcctagtcctgaatccacaccacagcagcctagccctgaatccacaccacagcattccagccttgaaaccacctcccggcagccagcattccaagcccttccagcacccgaaatccgccgctcctcttgctgccttttatctccagatgctaacgtgaaggcagcccctcaatccaggaaagcagggcctctgattcgcgccggcccgcattcctgctcctgtgccacttgcccctgcagctccgcttgctggcgtcgtctggggctatgccatagccgcatcttcgatgtccttctgcctcgggactggcagatggcgccagggagaggactccccaacctgctcaccttctacagagaggcactgaagcccagcttcccaccacccccacttctgctttgctctacagaaaatcttcaagaaaaccctccagtcatcgtaacgcgtgtcctccaagccctcggaactgtggctgtggctctgggggctctaggagctgcctactacatcactgaatccttgtgaacaagcccctaggcccacagtctggcagatccagtttccatcaaagggacctctcttgtcaccaaaatttaaaaaaagaaaaaaaaaacgagttctgtttctttagcatgttttacttagagacataaaagttggacttggcaaatgactaggaagggaggtctgggggccccagtgaccttttgggccacaggtcaagcagaactggtgcctgtcattcctgttcagggccacagacccccggtggagcagctttctctgcacacactcacagaacacagtgtttgctttagattttctcactctaaaggaagggattataaagcttaactcaatagctaacgtagttagtcatctgcacctctgtcccagggtaatcccagttactgggaataggaggaatgtgccggttcgcctccaggcctgcaccccagaggacagaggccctgtgcccaggaacactgtctctagaaacagcttcttttagggtcacctgtgatggggagcagcctgccatgcagccttgtgtttagtgctagtgatgtggctacacccagccagtgcctggtgcgattctacctctagctcctgaacaggcgactcgaaatcttagttcaaggtgatcccagcaaacaccaataggggagaggagtgtcaacgagggaaggaggctgggcctggtggctcatgcctataattccaagactttgggaggccaagacaggaggatggcttaagcccaggaggtcaaggctgcagtgagctatgattgcaccgctgcactccagcctggacgacatagcaagaccctgtctcaaaaaataaaaataaaaaaaaggaaccacca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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