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2024-04-27 17:29:34, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_054315726            3607 bp    mRNA    linear   PRI 05-OCT-2023
DEFINITION  PREDICTED: Homo sapiens B9 domain containing 1 (B9D1), transcript
            variant X8, mRNA.
ACCESSION   XM_054315726
VERSION     XM_054315726.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060941) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2023_10
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 10/02/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3607
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="17"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..3607
                     /gene="B9D1"
                     /gene_synonym="B9; EPPB9; JBTS27; MKS9; MKSR-1; MKSR1"
                     /note="B9 domain containing 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 39 long SRA reads, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 9 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:27077"
                     /db_xref="HGNC:HGNC:24123"
                     /db_xref="MIM:614144"
     CDS             438..578
                     /gene="B9D1"
                     /gene_synonym="B9; EPPB9; JBTS27; MKS9; MKSR-1; MKSR1"
                     /codon_start=1
                     /product="B9 domain-containing protein 1 isoform X8"
                     /protein_id="XP_054171701.1"
                     /db_xref="GeneID:27077"
                     /db_xref="HGNC:HGNC:24123"
                     /db_xref="MIM:614144"
                     /translation="
MFVPESTSKLQKFTSWFMGRRPEYTDPKVVAQGEGREATFRAVCQR"
     misc_feature    <438..554
                     /gene="B9D1"
                     /gene_synonym="B9; EPPB9; JBTS27; MKS9; MKSR-1; MKSR1"
                     /note="Ciliary basal body-associated, B9 protein; Region:
                     B9-C2; pfam07162"
                     /db_xref="CDD:429326"
ORIGIN      
ctctccgcagcttccggccaagttggactgcagctcgcggtttcctggcttctaggggtattgcaggcaccaatggaacaggttggggaggagagtttgggaccaagaacacccatgaacccttagaagccaccatagagtttccagagtatgatgacctctactgcaagtactgctttgtgtacggccaggactgggcccccacagcgggtctggaggaggggatctcacagatcacatccaagagccaagatgtgcggcaagcactggtgtggaacttccccattgatgtcacctttaaaagcaccaacccctacggctggccacagatcgtgctcagcgtgtatggaccagatgtgttcgggaacgatgtggttcgaggctatggggccgtgcacgtgcccttctcacctggccggcacaaaaggaccatccccatgtttgtcccagaatctacgtctaaactgcagaagtttacaagctggttcatggggcggcggcccgagtacacagaccccaaggtggtggctcagggtgaaggccgggaagccaccttcagggctgtctgtcaaagatagcagtgtttcaagatgaaagcggcttgagtccctgagtcactgacttctgtgagaaacttctgcgggaagccgctgagacctggagatgtgttactgcagcgtaaccaagagcatcccacacacccttctttctctcctgtcccctgcactgaacgggcaccccctgccaccagtccctagcctcctagctctgagtcaagcttgtctgcttatccttgggtggacaccaggagccaggcacttgcacagagagcagagggctgcagggcagtcccagacctccctccaggctcgtctcaaggcctctccaacccttcccatcagggtctcccagccgcctctgcctcggccttgcctcttcccgtgaccagagcacctcttccacctctgctgcctggagatgcacgtgtcctcccgccgctgccctcgtctggttggtggctctgaggcacaggccctctgtcggtcagctagctgttgcacagcaagccacctaagaaccagtggctccaacaggcccttcctctcaggaacacgcagttggctgggcagctccacgcactccctccctctgttgcctcagctgacaggcagtggcttcccagagcagctcttctgcagcatggacacaagaggaggcagagcacaggaagcctctggggacccggcacactgtcacttccacctcatccaaagcagcctccaccagtgacaaggccgcattaagagggcggacacagaagggtaaagggcagtggctagcacttcccccagcacacccgtgcaggccaccagtctcagcacctcacaaaaggcacgcctcccaccccctttccctgaggttcaggggcaaccaaatgcccagctcacgcgggcactaggaccaggctggtggcctcaataactgcagaccaagctccacaagaatcggctccctcatctcccacctctccagtggcacaggactgatgaagatggggtgggagaaggacacagccagaaaccgcatcatggtacaaatgataaattatatttatacagtaaataagtatcaacagtcaacacaagttcaaaaccagccaccggcctctgggactgagaaacagctgggtgacttcctccaccacggtgcccatcaggagggagcacgatggcacaggtgcaacatgcgtggcagtggccggtggcttcatgatcagtgcagtgggcaacagggacatgcactcgggatggcctgtgccagaagatggggcagggggctgtcttcttgggtcccggtggcccagtggctgtcatgttggggcctcaaagtcacatcatgaaagactcgttacaaaagaatcactgaccccaagtagtcgagtctagtctactgacctgtaaggctggcccaggccctgcaccgtctgaaggaaagcacctttctgggcaagcatcctgcctcccatcccattgcacctccccacccttcccccggcagacgagaccagccaccggcttacccaaatggcagcgggagcctaagacccagccgcaggcctgcagttctggcagaaggtggctggtcaggaactctagacacggctcctgggactggagagggcagcctcaggaacagcatgagtgggtgcagtccccactcagagcctgcatgtcccagcagcccagagaccatttaagatctctcctgtgccggtgcgaagggtaatcttctggaaccagagaggggctggcaggtggtcagctgcccttagagctagaggtgagaaattcccatggtggaaaaagggccagaaacatccaccaggcaagctgcccagacacaggattgggggaatgtcccctccctgggtaaaagcaagtcttttctggtctttaatgcacgacgtaatacttttacagtggtgggtgaggtgaggacagtaggagtttggaagagggaggtaatattagtgcatgtttgttaaaaatccctcccaggtgaatgacttttttcttcatctccaaaatacaagagaattatttttaggtctccaacttaaaaataatatctggagttagcaggtaggtggatcagggccagccctggtcccttagccccccacccctgtcttagcctagggactgttgcccagggacccgtgggcacagaagcaccccccaccccacgccctcgggacaactgccatttccacattatccccatctttagcctgagcgtggattaagacagaggagatcacagacacacaaggttaaagatgtttcttccatttcagatttccattgtaaacagaagtcctgttaatccctgcatgcctttaataaaaaaaaggaattagttgataaaaattggtgagtcacattcatacattagatttttttctttaactttcaggatgttggtatattcgtaagaaaaatagcctctcaggatctagccaaaaaggctgaaagtcaatcagtttagtaattcaccaaaaacaggagctaaagaaaggaaaaggcaactggaggctaggattttttgttgctgttgttttttttttaaataaacatcatcatctatgtgtaatcaaattcccatattttcttcctataaagaatttgctttagtttttcaataaggcatttttttgtcatccaaacatctcttccttttaaaattttcttagagttaaaaccataaataagaggatttaaaccactaaaatgacacgtgccaacatcttcattcagccagacctggtaaattctatcaaaactagacagttaaataagaaccacgttataaaaatattagccaaaaaaagactattagataattctgcaaactcaaatatgaaactgtactaaacaaaatatgtgcaaaggtacacaagcatagagccacgttgggggttatgctcagattagttttaaagctcgctctagtggatttaattcaagagttgtccacggtggtggtgtttactttgaactcacacgagtcaaagaaaaataaaatatgcacaaccacttccccaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]