GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2025-06-17 07:27:03, GGRNA.v2 : RefSeq release 229 (Mar, 2025)

LOCUS       NR_189147                439 bp    RNA     linear   PRI 01-NOV-2023
DEFINITION  Homo sapiens uncharacterized LOC124902727 (LOC124902727),
            transcript variant 2, long non-coding RNA.
ACCESSION   NR_189147
VERSION     NR_189147.1
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP001825.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA2146236, SAMN03465418
                              [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-142               AP001825.4         21585-21726
            143-200             AP001825.4         63284-63341
            201-266             AP001825.4         64463-64528
            267-439             AP001825.4         101704-101876
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="11"
                     /map="11q14.1"
     gene            1..439
                     /gene="LOC124902727"
                     /note="uncharacterized LOC124902727"
                     /db_xref="GeneID:124902727"
     ncRNA           1..439
                     /ncRNA_class="lncRNA"
                     /gene="LOC124902727"
                     /product="uncharacterized LOC124902727, transcript variant
                     2"
                     /db_xref="GeneID:124902727"
     exon            1..142
                     /gene="LOC124902727"
                     /inference="alignment:Splign:2.1.0"
     exon            143..200
                     /gene="LOC124902727"
                     /inference="alignment:Splign:2.1.0"
     exon            201..266
                     /gene="LOC124902727"
                     /inference="alignment:Splign:2.1.0"
     exon            267..439
                     /gene="LOC124902727"
                     /inference="alignment:Splign:2.1.0"
     regulatory      416..421
                     /regulatory_class="polyA_signal_sequence"
                     /gene="LOC124902727"
                     /note="hexamer: AATAAA"
     polyA_site      439
                     /gene="LOC124902727"
                     /note="major polyA site"
ORIGIN      
ggcagtggcagctcgctgggggacccaaacgctgtgctcgccgggcacatggagcgacagcctagaccgagctgccgcttcgatcactgccccctgcacccgccgtggccatcccggagccccggtggaagcaacgccgcggaaacatcatatttgaaaacaaggtggggccttcatcatatgcaaccttcatattttagggcctgcctctttctattccttgacataaaccggactcttcatgctaatcaggctggaagtgtatcataaggatgctgaagctaaaaacaatgtccaaggccaaataactgacaagaagaaggccaaggcatctagaaaccatgtcttctgattcacagttgatcatatttttctatcacctttgataaggcataaaatattattttgatgagtaaataaaaagactttggacacctgc
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]