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Previous release (v1)
2025-06-17 07:18:43, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS NR_125844 328 bp RNA linear PRI 08-MAY-2023
DEFINITION Homo sapiens long intergenic non-protein coding RNA 2541
(LINC02541), long non-coding RNA.
ACCESSION NR_125844
VERSION NR_125844.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 328)
AUTHORS Shao IH, Peng PH, Wu HH, Chen JL, Lai JC, Chang JS, Wu HT, Wu KJ,
Pang ST and Hsu KW.
TITLE RP11-367G18.1 V2 enhances clear cell renal cell carcinoma
progression via induction of epithelial-mesenchymal transition
JOURNAL Cancer Med (2023) In press
PUBMED 36847128
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 328)
AUTHORS Brandenberger R, Wei H, Zhang S, Lei S, Murage J, Fisk GJ, Li Y, Xu
C, Fang R, Guegler K, Rao MS, Mandalam R, Lebkowski J and Stanton
LW.
TITLE Transcriptome characterization elucidates signaling networks that
control human ES cell growth and differentiation
JOURNAL Nat Biotechnol 22 (6), 707-716 (2004)
PUBMED 15146197
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL357519.19.
Sequence Note: The RefSeq transcript was derived from the reference
genome assembly. The genomic coordinates were determined from
alignments.
##Evidence-Data-START##
Transcript exon combination :: AW630616.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA1968540, SAMEA2142348
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-61 AL357519.19 55485-55545
62-216 AL357519.19 77885-78039
217-328 AL357519.19 81914-82025
FEATURES Location/Qualifiers
source 1..328
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="6"
/map="6q21"
gene 1..328
/gene="LINC02541"
/note="long intergenic non-protein coding RNA 2541"
/db_xref="GeneID:101927686"
/db_xref="HGNC:HGNC:53574"
ncRNA 1..328
/ncRNA_class="lncRNA"
/gene="LINC02541"
/product="long intergenic non-protein coding RNA 2541"
/db_xref="GeneID:101927686"
/db_xref="HGNC:HGNC:53574"
exon 1..61
/gene="LINC02541"
/inference="alignment:Splign:2.1.0"
variation 2
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771972284"
variation 3
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:2482150382"
variation 9
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1483460788"
variation 11
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2114372286"
variation 21
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:1582823684"
variation 27..28
/gene="LINC02541"
/replace="g"
/replace="gg"
/db_xref="dbSNP:1389457565"
variation 27
/gene="LINC02541"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1771972117"
variation 29
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1256079351"
variation 31
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771971954"
variation 32
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771971898"
variation 34
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771971847"
variation 37
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771971795"
variation 39
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:989621543"
variation 40
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1426037568"
variation 46
/gene="LINC02541"
/replace="g"
/replace="t"
/db_xref="dbSNP:959596391"
variation 47
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1372895155"
variation 50..53
/gene="LINC02541"
/replace="aaa"
/replace="aaaa"
/db_xref="dbSNP:541202064"
variation 52
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:1166269750"
variation 53
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:572860106"
variation 58
/gene="LINC02541"
/replace="g"
/replace="t"
/db_xref="dbSNP:964967854"
variation 59
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771970874"
exon 62..216
/gene="LINC02541"
/inference="alignment:Splign:2.1.0"
variation 62
/gene="LINC02541"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:1771521312"
variation 63
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2482111807"
variation 64
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1043394094"
variation 66
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771521253"
variation 67
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:2482111797"
variation 68
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:371770229"
variation 73
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:946405994"
variation 75
/gene="LINC02541"
/replace="a"
/replace="t"
/db_xref="dbSNP:1771521169"
variation 78
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1168757630"
variation 81
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:1400883287"
variation 82
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771521098"
variation 87
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2482111788"
variation 88
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2482111787"
variation 92
/gene="LINC02541"
/replace=""
/replace="c"
/db_xref="dbSNP:1403247059"
variation 92
/gene="LINC02541"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:904940047"
variation 98
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:916483610"
variation 101
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771520975"
variation 111
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2114341790"
variation 112
/gene="LINC02541"
/replace="c"
/replace="g"
/db_xref="dbSNP:2482111771"
variation 113
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:2482111767"
variation 114
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2482111766"
variation 115
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771520944"
variation 118
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771520908"
variation 120
/gene="LINC02541"
/replace="a"
/replace="t"
/db_xref="dbSNP:1771520875"
variation 124..126
/gene="LINC02541"
/replace="aa"
/replace="aaa"
/db_xref="dbSNP:1295101540"
variation 124
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1044871401"
variation 126
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:949121965"
variation 130
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771520761"
variation 132
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:191797454"
variation 136
/gene="LINC02541"
/replace="c"
/replace="g"
/db_xref="dbSNP:1771520677"
variation 138
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:1229416232"
variation 139
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771520622"
variation 140
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:1771520594"
variation 141
/gene="LINC02541"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1771520567"
variation 146
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1055429046"
variation 147
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:939286192"
variation 148
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2482111715"
variation 152
/gene="LINC02541"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:927767260"
variation 153
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1469411281"
variation 154
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771520426"
variation 155
/gene="LINC02541"
/replace=""
/replace="t"
/db_xref="dbSNP:2482111709"
variation 156
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:1771520399"
variation 157
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:2482111703"
variation 158
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771520368"
variation 160
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771520330"
variation 163
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2482111575"
variation 166..172
/gene="LINC02541"
/replace="gaa"
/replace="gaatgaa"
/db_xref="dbSNP:1771520302"
variation 166
/gene="LINC02541"
/replace="g"
/replace="t"
/db_xref="dbSNP:2482111573"
variation 168
/gene="LINC02541"
/replace="a"
/replace="t"
/db_xref="dbSNP:2114341716"
variation 169
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:2482111569"
variation 175
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771520262"
variation 176
/gene="LINC02541"
/replace="c"
/replace="g"
/db_xref="dbSNP:552053810"
variation 177
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:1446904223"
variation 182
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:530614597"
variation 184
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:1207286506"
variation 186
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2482111548"
variation 187
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:2482111544"
variation 188
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2482111542"
variation 189
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771520126"
variation 190..195
/gene="LINC02541"
/replace="ctct"
/replace="ctctct"
/db_xref="dbSNP:531908609"
variation 191
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:550053739"
variation 197
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:149130101"
variation 204
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1582812342"
variation 208
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1465579580"
variation 209
/gene="LINC02541"
/replace="g"
/replace="t"
/db_xref="dbSNP:1236336024"
exon 217..328
/gene="LINC02541"
/inference="alignment:Splign:2.1.0"
variation 217
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1004550130"
variation 219
/gene="LINC02541"
/replace="a"
/replace="t"
/db_xref="dbSNP:888250774"
variation 222
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1562242790"
variation 225
/gene="LINC02541"
/replace="a"
/replace="t"
/db_xref="dbSNP:1582810096"
variation 229
/gene="LINC02541"
/replace="c"
/replace="g"
/db_xref="dbSNP:547500476"
variation 232
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1361075692"
variation 234
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:962944305"
variation 239
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771437571"
variation 240
/gene="LINC02541"
/replace="a"
/replace="t"
/db_xref="dbSNP:1771437529"
variation 244
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2482104705"
variation 247
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1291578139"
variation 249
/gene="LINC02541"
/replace="c"
/replace="g"
/db_xref="dbSNP:1771437475"
variation 255
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771437447"
variation 260
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1369392496"
variation 264
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1387590494"
variation 269
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771437313"
variation 272
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771437266"
variation 278
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771437222"
variation 280
/gene="LINC02541"
/replace="c"
/replace="g"
/db_xref="dbSNP:1306515798"
variation 282
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:1374822401"
variation 284
/gene="LINC02541"
/replace="a"
/replace="t"
/db_xref="dbSNP:1771437091"
variation 285
/gene="LINC02541"
/replace="a"
/replace="c"
/replace="g"
/db_xref="dbSNP:761254668"
variation 287
/gene="LINC02541"
/replace="c"
/replace="g"
/db_xref="dbSNP:1771436972"
variation 290
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771436929"
variation 292
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1287441571"
variation 300
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771436834"
variation 302
/gene="LINC02541"
/replace="a"
/replace="t"
/db_xref="dbSNP:2482104617"
variation 304
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771436788"
variation 305
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:2482104613"
variation 306
/gene="LINC02541"
/replace="c"
/replace="g"
/db_xref="dbSNP:1191408875"
variation 311
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1017232920"
variation 312
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:990984514"
variation 313
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:2114335711"
variation 314
/gene="LINC02541"
/replace="c"
/replace="t"
/db_xref="dbSNP:1771436604"
variation 320
/gene="LINC02541"
/replace="c"
/replace="g"
/db_xref="dbSNP:555054203"
variation 326
/gene="LINC02541"
/replace="a"
/replace="c"
/db_xref="dbSNP:536204914"
variation 327
/gene="LINC02541"
/replace="a"
/replace="g"
/db_xref="dbSNP:1771436471"
ORIGIN
ggagttaggaacagactataagaaatggttggtctggaggaaaaagggtaaaacttatgagggcccttgtgaattgatgaatatgaagacactaagaaagcagaaatagaactgagaagaatgaaataactgtctctacctttctcgaattgtctaatatggaaagaatgaaagacagctaataagcaactctctgcaagaagacatatggcttagaatctacttggagagagtcaaacacagaatccctttgaatttaatggccattccaggtgatttgaacagccaaataagaaacaggtcctcttcaatgtacaatctgccaagt
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]