2024-05-02 23:31:35, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NR_039950 84 bp RNA linear PRI 06-FEB-2022 DEFINITION Homo sapiens microRNA 4787 (MIR4787), microRNA. ACCESSION NR_039950 VERSION NR_039950.1 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 84) AUTHORS Wang L, Wang Z, Zhang R, Huang L, Zhao Z, Yang Y, Cui L and Zhang S. TITLE MiR-4787-5p Regulates Vascular Smooth Muscle Cell Apoptosis by Targeting PKD1 and Inhibiting the PI3K/Akt/FKHR Pathway JOURNAL J Cardiovasc Pharmacol 78 (2), 288-296 (2021) PUBMED 33958547 REMARK GeneRIF: MiR-4787-5p Regulates Vascular Smooth Muscle Cell Apoptosis by Targeting PKD1 and Inhibiting the PI3K/Akt/FKHR Pathway. REFERENCE 2 (bases 1 to 84) AUTHORS Enomoto Y, Takagi R, Naito Y, Kiniwa T, Tanaka Y, Hamada-Tsutsumi S, Kawano M, Matsushita S, Ochiya T and Miyajima A. TITLE Identification of the novel 3' UTR sequences of human IL-21 mRNA as potential targets of miRNAs JOURNAL Sci Rep 7 (1), 7780 (2017) PUBMED 28798470 REMARK Publication Status: Online-Only REFERENCE 3 (bases 1 to 84) AUTHORS Hansen TB, Kjems J and Bramsen JB. TITLE Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis JOURNAL RNA Biol 8 (3), 378-383 (2011) PUBMED 21558790 REFERENCE 4 (bases 1 to 84) AUTHORS Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A and Rovira C. TITLE Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene JOURNAL Cancer Res 71 (1), 78-86 (2011) PUBMED 21199797 REFERENCE 5 (bases 1 to 84) AUTHORS Kozomara A and Griffiths-Jones S. TITLE miRBase: integrating microRNA annotation and deep-sequencing data JOURNAL Nucleic Acids Res 39 (Database issue), D152-D157 (2011) PUBMED 21037258 REFERENCE 6 (bases 1 to 84) AUTHORS Griffiths-Jones S, Grocock RJ, van Dongen S, Bateman A and Enright AJ. TITLE miRBase: microRNA sequences, targets and gene nomenclature JOURNAL Nucleic Acids Res 34 (Database issue), D140-D144 (2006) PUBMED 16381832 COMMENT PROVISIONAL REFSEQ: This record is based on preliminary annotation provided by NCBI staff in collaboration with miRBase. The reference sequence was derived from AC096920.2. Summary: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]. Sequence Note: This record represents a predicted microRNA stem-loop as defined by miRBase. Some sequence at the 5' and 3' ends may not be included in the intermediate precursor miRNA produced by Drosha cleavage. ##Evidence-Data-START## Transcript is intronless :: LM611422.1 [ECO:0000345] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-84 AC096920.2 38383-38466 c FEATURES Location/Qualifiers source 1..84 /organism="Homo sapiens" /mol_type="transcribed RNA" /db_xref="taxon:9606" /chromosome="3" /map="3p21.2" gene 1..84 /gene="MIR4787" /gene_synonym="mir-4787" /note="microRNA 4787" /db_xref="GeneID:100616138" /db_xref="HGNC:HGNC:41653" /db_xref="miRBase:MI0017434" precursor_RNA 1..84 /gene="MIR4787" /gene_synonym="mir-4787" /product="microRNA 4787" /db_xref="GeneID:100616138" /db_xref="HGNC:HGNC:41653" /db_xref="miRBase:MI0017434" exon 1..84 /gene="MIR4787" /gene_synonym="mir-4787" /inference="alignment:Splign:2.1.0" variation 1 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:977038833" variation 2 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="g" /db_xref="dbSNP:1344013128" variation 3 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="g" /db_xref="dbSNP:922545786" variation 9 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="c" /db_xref="dbSNP:2107624484" variation 10 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:2033834480" variation 11..26 /gene="MIR4787" /gene_synonym="mir-4787" /replace="gtggcgg" /replace="gtggcgggggtggcgg" /db_xref="dbSNP:2033834746" variation 11 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="g" /db_xref="dbSNP:2033834617" ncRNA 14..35 /ncRNA_class="miRNA" /gene="MIR4787" /gene_synonym="mir-4787" /product="hsa-miR-4787-5p" /db_xref="miRBase:MIMAT0019956" /db_xref="GeneID:100616138" /db_xref="HGNC:HGNC:41653" /db_xref="miRBase:MI0017434" variation 15 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:2033834879" variation 17 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="g" /db_xref="dbSNP:1419795843" variation 19..29 /gene="MIR4787" /gene_synonym="mir-4787" /replace="ggtggcggcgg" /replace="ggtggcggcggtggcggcgg" /db_xref="dbSNP:1410283258" variation 19 /gene="MIR4787" /gene_synonym="mir-4787" /replace="g" /replace="t" /db_xref="dbSNP:1185815330" variation 21 /gene="MIR4787" /gene_synonym="mir-4787" /replace="g" /replace="t" /db_xref="dbSNP:937341665" variation 22..30 /gene="MIR4787" /gene_synonym="mir-4787" /replace="ggcggcggc" /replace="ggcggcggcggcggcggc" /db_xref="dbSNP:1205425429" variation 22 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="g" /db_xref="dbSNP:2033835627" variation 23 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="g" /db_xref="dbSNP:2033835904" variation 24 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:1258476104" variation 27 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="c" /db_xref="dbSNP:2033836208" variation 30 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:1252597605" variation 32 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:2107624668" variation 34 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="g" /db_xref="dbSNP:2033836589" variation 35 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="g" /db_xref="dbSNP:1211419587" variation 36 /gene="MIR4787" /gene_synonym="mir-4787" /replace="g" /replace="t" /db_xref="dbSNP:2033836997" variation 38 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="g" /db_xref="dbSNP:867895270" variation 43 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="g" /db_xref="dbSNP:985301871" variation 46 /gene="MIR4787" /gene_synonym="mir-4787" /replace="g" /replace="t" /db_xref="dbSNP:2107624720" variation 50 /gene="MIR4787" /gene_synonym="mir-4787" /replace="g" /replace="t" /db_xref="dbSNP:2107624727" ncRNA 51..74 /ncRNA_class="miRNA" /gene="MIR4787" /gene_synonym="mir-4787" /product="hsa-miR-4787-3p" /db_xref="miRBase:MIMAT0019957" /db_xref="GeneID:100616138" /db_xref="HGNC:HGNC:41653" /db_xref="miRBase:MI0017434" variation 54..78 /gene="MIR4787" /gene_synonym="mir-4787" /replace="gcgccgcccactgccccgcgccgcc" /replace="gcgccgcccactgccccgcgccgcccactgccccgcgccgcc" /db_xref="dbSNP:1215012450" variation 55 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="g" /db_xref="dbSNP:1317404607" variation 56 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="g" /db_xref="dbSNP:1285749936" variation 57 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:2033837868" variation 58 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:1230862465" variation 61 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:1354491242" variation 63 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="t" /db_xref="dbSNP:1209791713" variation 65 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:2033838452" variation 69 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:1417050028" variation 70 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:1360282676" variation 71 /gene="MIR4787" /gene_synonym="mir-4787" /replace="" /replace="g" /db_xref="dbSNP:2033838990" variation 72 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="c" /db_xref="dbSNP:868757328" variation 76 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:2033839282" variation 77 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="g" /replace="t" /db_xref="dbSNP:946807134" variation 81 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="c" /db_xref="dbSNP:2107624927" variation 82 /gene="MIR4787" /gene_synonym="mir-4787" /replace="c" /replace="t" /db_xref="dbSNP:1455858573" variation 83 /gene="MIR4787" /gene_synonym="mir-4787" /replace="a" /replace="c" /db_xref="dbSNP:1347406949" variation 84 /gene="MIR4787" /gene_synonym="mir-4787" /replace="g" /replace="t" /db_xref="dbSNP:1162954251" ORIGIN
cggtccagacgtggcgggggtggcggcggcatcccggacggcctgtgagggatgcgccgcccactgccccgcgccgcctgaccg
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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