LOCUS       XM_046918555            1950 bp    mRNA    linear   VRT 01-MAR-2022
DEFINITION  PREDICTED: Gallus gallus trafficking protein particle complex 6A
            (TRAPPC6A), transcript variant X1, mRNA.
ACCESSION   XM_046918555
VERSION     XM_046918555.1
DBLINK      BioProject: PRJNA698614
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_052577.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gallus gallus Annotation Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1950
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /isolate="bGalGal1"
                     /db_xref="taxon:9031"
                     /chromosome="5"
                     /sex="female"
                     /tissue_type="blood"
                     /geo_loc_name="USA: Fayetteville"
                     /lat_lon="36.0822 N 94.1719 W"
                     /collection_date="20-May-2019"
                     /collected_by="Nick Anthony"
     gene            1..1950
                     /gene="TRAPPC6A"
                     /gene_synonym="TRAPPC6B"
                     /note="trafficking protein particle complex 6A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 mRNAs, 5 ESTs, 428 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="CGNC:7721"
                     /db_xref="GeneID:423337"
     misc_feature    1
                     /gene="TRAPPC6A"
                     /gene_synonym="TRAPPC6B"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             27..503
                     /gene="TRAPPC6A"
                     /gene_synonym="TRAPPC6B"
                     /codon_start=1
                     /product="trafficking protein particle complex subunit 6B
                     isoform X1"
                     /protein_id="XP_046774511.1"
                     /db_xref="GeneID:423337"
                     /db_xref="CGNC:7721"
                     /translation="

MADEALFLLLHNEMVAGLYRAAEQGEGENGRCTTKLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHAPKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKM"

     misc_feature    33..494
                     /gene="TRAPPC6A"
                     /gene_synonym="TRAPPC6B"
                     /note="Trs33 subunit of the TRAPP complex; Region:
                     TRAPPC6A_Trs33; cd14944"
                     /db_xref="CDD:271347"
     misc_feature    order(39..41,48..50,60..62,333..338,366..368,378..380)
                     /gene="TRAPPC6A"
                     /gene_synonym="TRAPPC6B"
                     /note="synbindin interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:271347"
     misc_feature    order(42..47,51..59,63..68,75..77,129..131,141..143,
                     150..155,162..167,174..176,249..251,258..260,318..320,
                     387..389)
                     /gene="TRAPPC6A"
                     /gene_synonym="TRAPPC6B"
                     /note="BET3 interface [polypeptide binding]; other site"
                     /db_xref="CDD:271347"
     polyA_site      1950
                     /gene="TRAPPC6A"
                     /gene_synonym="TRAPPC6B"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ggggggacgcccgcagcgcagcggacatggcggacgaggcgctgttcctgctgctgcacaacgagatggtggcggggctgtaccgcgccgccgagcagggcgaaggggagaacggccgctgcaccaccaagctggagagcatgggcttccgcgtcgggcaggggctgatcgaaaggtttacaaaagatacagccaggttcaaggatgaattagatattatgaagttcatttgcaaagatttttggacaactgtattcaaaaaacaaatagacaacctaaggactaatcatcagggtatttatgttcttcaagacaacaaatttcgactcttgacacaaatgtctgcaggaaagcagtatttagaacatgcaccaaagtatttagcatttacctgtggattaatcagagggggcctatcgaatttgggaataaagagtattgtaacagctgaagtttcatcaatgcctgcatgtaaattccaggtgatgatacagaaaatgtagagcacgttcagatctggctacaactcactcctgtaatgagtgtgtgcaggaagatgattaggccagcatgaagctataaagacatcaccaagaccatagaggagattgggggttgcttgatgctacttgttacaagatttgtgtaacaatatgtatcttgctgtgggtaagcatgaaaacatcttgtttaaacttgtaacaaattttactgtaagacttttctgttggcagcgtcaggccttacactttcagaaatgtgagaatgtcctgtgatagcaattcagtttctactttgagagcagcaaataacaggctagatataaaagataacgcactagaacaacatttttgtctgttttaaccatcttctgtgatggaataaatgtatgttgtcaaattgctgcctattgtcaataggcaggaacactagaagttgttcttccgtaagttctaaggaagttctgcagcttgtaatggatcaagccttttcgagatagttgtcttctgtagtctataaatctgtgctggcaagctgtagacatgtaatgtctattatatgtaggcatgtaatatcacatagacatgataaccaggggcttattataattgagtttaagatgcgaacaaattcagctcttttcaggtaccgtgaatgctagctcagattagttctaactggataatttgacacttctaggaaagatctaaagcactagcagaatgccagcatgctgtctagagacctagcaaagataaaagtaaccgtggtggttggtactctgcagggatcagttgtgtgactgaaaacactgagcacttatactattaaggttgtccaccttatgattgtaaggttagagaattagctaactgctattcttcctgagtgcattttatggtttcttcagttgccaactcatgctgtttttaaatgctgttattgaaaggactgacttgcactgggcctaacagatggacacttcagtgacatccattaggcccacacaacttggtaggccattttgtaatttgcttctctagaattaaaactgcagtagttactttcattttcacttgacagttaagattacagttccacataaaaaagttctaataattctaatttacactaagggcttaaccagtaacttgtgcttaatgatatgtcttttttaaatagtgagggattgacatctgcttcctgtgcagtgtgaaattcaatactgtctatcagtctgccattaccagcagaaatcagaattcctttaaactagattttcaattgttgaagataattagaacccaacagaatcatgaatgtacaaagcagacaccagtattcttggcaaagcactccctgttcaatatgttaagccaaatagctgagctaatgtatttgtcaagatactatacaggaaataaatttgtccattttaagtttaagaaa

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