LOCUS       NM_204896               2208 bp    mRNA    linear   VRT 24-SEP-2023
DEFINITION  Gallus gallus BARX homeobox 2 (BARX2), mRNA.
ACCESSION   NM_204896
VERSION     NM_204896.2
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Tang H, Finn RD and Thomas PD.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C,
            Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2208)
  AUTHORS   Smith DM and Tabin CJ.
  TITLE     Chick Barx2b, a marker for myogenic cells also expressed in
            branchial arches and neural structures
  JOURNAL   Mech Dev 80 (2), 203-206 (1999)
   PUBMED   10072789
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000341.1.
            
            On Nov 4, 2021 this sequence version replaced NM_204896.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF102555.1, SRR12888489.195536.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992393, SAMEA103992415
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-522               JAENSK010000341.1  1400177-1400698
            523-817             JAENSK010000341.1  1422643-1422937
            818-902             JAENSK010000341.1  1425529-1425613
            903-2208            JAENSK010000341.1  1426342-1427647
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="24"
                     /map="24"
     gene            1..2208
                     /gene="BARX2"
                     /gene_synonym="BARX2B"
                     /note="BARX homeobox 2"
                     /db_xref="CGNC:813"
                     /db_xref="GeneID:395714"
     exon            1..522
                     /gene="BARX2"
                     /gene_synonym="BARX2B"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    213..215
                     /gene="BARX2"
                     /gene_synonym="BARX2B"
                     /note="upstream in-frame stop codon"
     CDS             351..1154
                     /gene="BARX2"
                     /gene_synonym="BARX2B"
                     /note="homeodomain transcription factor BARX2B; BarH-like
                     homeobox 2"
                     /codon_start=1
                     /product="homeobox protein BarH-like 2"
                     /protein_id="NP_990227.1"
                     /db_xref="CGNC:813"
                     /db_xref="GeneID:395714"
                     /translation="

MHCPPQPRLAKAGRRRYKTFMIDEILSKETCDYFEKLSLYSVCPSLLVRPKPLHSCAGSPSLRAYPLISVITRQPSVVPHLVPAATSSHVLPAQTSATASSETPASETHGSSESEAEQPTPRLKKPRRSRTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIPTSEEIEAEEKMNSQAQSQEAEGSQAPEEPKVTEEKPEVSLETEESPEHIAEPSSEEVTPLS"

     misc_feature    729..899
                     /gene="BARX2"
                     /gene_synonym="BARX2B"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            523..817
                     /gene="BARX2"
                     /gene_synonym="BARX2B"
                     /inference="alignment:Splign:2.1.0"
     exon            818..902
                     /gene="BARX2"
                     /gene_synonym="BARX2B"
                     /inference="alignment:Splign:2.1.0"
     exon            903..2208
                     /gene="BARX2"
                     /gene_synonym="BARX2B"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gccgggatcctcccagccgggcgcagggtaacaatggtgctcggcggggagcagcgggcgccctgattgacagccggagcgtcctaaaaaggccgcggggagatgcttatcggcacggttatatagcggggcagcggcgctgcgagccgagggagcgccgccgagccgagccgagccgaaccgaacccagcgtagcccagcatagcccagcgtagcccagcgctgcggagcgcggaccgagcgcgggggcagtgcccgcaggaggagctcgggcggctccgcgccccatccatgagcggccgcccgccgccctggcagccccgcgcagccccgcggccccggggccggccatgcactgcccgccgcagccccggctcgccaaggcaggcaggaggcgctacaagactttcatgatcgacgaaattctctccaaggagacgtgcgattacttcgagaaactttccctctattccgtctgtccgtccctcctggtccggcccaagccgctgcactcctgcgcggggtccccttctctgagggcatatcctctcatctccgttatcaccaggcagccctccgtggtccctcacctcgttccggctgccaccagctcccatgtgctgccagctcagacctcagccaccgcgagctcggagacgccagccagcgagacccacggcagcagcgagtcggaggcagagcagcccacacctcggttaaaaaagccacgccggagtcggaccatcttcacagagctccaactgatgggcttggagaagaaattccagaagcaaaagtatttgtctacacccgacaggcttgacttagcgcagtcgctggggctgactcagctccaggtgaagacgtggtaccagaaccgcaggatgaagtggaagaaaatggtgttgaaaggtgggcaggaagctccaacaaagcccaaaggccgtccaaagaaaaactccattcccacctcagaggaaattgaagcagaagagaaaatgaacagccaggctcagagtcaggaggcagagggatctcaagcccccgaggagcctaaagtgacagaggagaagccagaagtctctttggagacagaagagtctccagaacatatagcagagccctcctcagaggaggttacgccattaagttaaaagggaaaaagagaagggaaagggaaaaaaagaaaaagcaaagagagaaaccaaaaccaaatatatatatgtgtgtgtatatatatatatatatttaaatatgtatgtaattgttggcatgtacatatatatataaatatatatatatatatgtgtagaccttgtgtataagttgaaaggttggtcactttgtgcctttgggaatcagccatcatgggccacggtgggataaggacatccagtgtgagcggtggcacatgtatgccttcccacagagaacaatggaggcctgaatgtatttccagagaaaaacatgtccagaaatcccagacagctcctggcagatcaaggagaaggccagggctcctttcctgcagagggaggcagatgtgtagtggtacggctgtgttggatggttccgtgtgttcgcttggctttatccttgcctttaaaagtagtgcaaatggactcggcctggtcttggatcagggacagctaagaaatggggagctctgacagcaccatttcgacatgtaaccagcacttatttgagttagggatgggcccaacttaaacattttgggggaagagttcagacacatgggtttgctttggcccagcatagagcccaaagcttctgaagagagactcatacccaggtcagcgctcagatttcgtgtctcgtggttatttgggtgccgtgcctgtgaatttgcagtgatctaggataaaacttccaaggagatgagggtttggatttgagtctgctccaaaagctttggaatgcttggatctgggatttttgctttgggcccacttctcattttttctagggtttttaaagaacatttaagtgtttccagggttttgggagaaggttggatttaagaagttgctgcagaaagttcgcgtttgtttaagatgtgtgccaagaatagatgtgcatcatgtttcctaaagtcttgttaagggtgcattttgcccaaaggctgcaagagatgtattaagataacctttattttttagttaaaaccgaaatatataaacaaaccag

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