LOCUS       XM_068214527           14984 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio CDC42 binding protein kinase alpha
            (DMPK-like) a (cdc42bpaa), mRNA.
ACCESSION   XM_068214527
VERSION     XM_068214527.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq; corrected model.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007128.7) and transcript sequence (GDQH01012544.1) annotated
            using gene prediction method: Gnomon, supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            assembly gap :: added 118 transcript bases to patch genome assembly
                            gap
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1148              BX248131.6         89727-90874         c
            1149-1240           BX248131.6         59869-59960         c
            1241-1324           BX248131.6         47681-47764         c
            1325-1420           BX248131.6         47182-47277         c
            1421-1569           BX248131.6         37700-37848         c
            1570-1663           BX248131.6         5017-5110           c
            1664-1705           BX248131.6         539-580             c
            1706-1906           FO818681.2         28480-28680
            1907-2155           FO818681.2         29506-29754
            2156-2235           FO818681.2         30127-30206
            2236-2396           FO818681.2         31426-31586
            2397-2519           FO818681.2         34182-34304
            2520-2653           FO818681.2         36549-36682
            2654-2896           FO818681.2         37758-38000
            2897-3007           FO818681.2         38232-38342
            3008-3255           FO818681.2         40733-40980
            3256-3337           FO818681.2         41460-41541
            3338-3441           FO818681.2         50559-50662
            3442-3547           FO818681.2         53107-53212
            3548-3696           FO818681.2         53673-53821
            3697-3788           FO818681.2         55749-55840
            3789-3865           FO818681.2         56289-56365
            3866-3904           FO818681.2         56648-56686
            3905-4024           FO818681.2         59827-59946
            4025-4099           FO818681.2         60545-60619
            4100-4205           FO818681.2         61736-61841
            4206-4342           FO818681.2         61932-62068
            4343-4482           FO818681.2         66158-66297
            4483-4564           FO818681.2         66380-66461
            4565-4784           FO818681.2         68946-69165
            4785-4847           FO818681.2         71252-71314
            4848-5447           FO818681.2         74184-74783
            5448-5545           FO818681.2         77858-77955
            5546-5630           FO818681.2         78104-78188
            5631-5754           FO818681.2         82042-82165
            5755-5872           FO818681.2         84535-84652
            5873-5990           GDQH01012544.1     2971-3088           c
            5991-6151           FO818681.2         89201-89361
            6152-6226           FO818681.2         92259-92333
            6227-14984          CU462878.9         93504-102261        c
FEATURES             Location/Qualifiers
     source          1..14984
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="17"
     gene            1..14984
                     /gene="cdc42bpaa"
                     /note="CDC42 binding protein kinase alpha (DMPK-like) a;
                     The sequence of the model RefSeq transcript was modified
                     relative to its source genomic sequence to represent the
                     inferred CDS: added 118 bases not found in genome
                     assembly; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 ESTs, 1 long SRA read, 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:567912"
                     /db_xref="ZFIN:ZDB-GENE-120727-12"
     misc_feature    1
                     /gene="cdc42bpaa"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             971..6358
                     /gene="cdc42bpaa"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: added 118 bases not found in
                     genome assembly"
                     /codon_start=1
                     /product="serine/threonine-protein kinase MRCK alpha"
                     /protein_id="XP_068070628.1"
                     /db_xref="GeneID:567912"
                     /db_xref="ZFIN:ZDB-GENE-120727-12"
                     /translation="

MSGEVRLKKLEKLILDGPVQANGQCFSVESLLDVLICIYDECTNSPLRREKNVAEFLEWAKPFTSKVKQMRLHKEDFEILKVIGRGAFGEVAVVKVKSSDKVFAMKILNKWEMLKRAETACFREERDVLVNGDSQWITTLHYAFQDDNFLYLVMDYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLHYVHRDIKPDNILIDVNGHIRLADFGSCLKLTEDGTTARQDFPPTSDKSRVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERFQFPAQMTDVSENAKDLIRRLICCREHRLGQNGIEDFKQHPFFSGIDWQNIRNCDAPYIPEVSSPSDTSNFDVDDDCLKNTETMPPPSHTAFSGHHLPFVGFTYTSNCTLSDRGCLRESAAPAQMDVCVQRGLEDSLATEAYERRIRRLEQEKLELGRKLQESTKAVQALQYSSSDGPVSSNREFEIRGLKEEIEMLKKQIADTGQVEQQLEQAISARSDMEDSSKQIRSLEKQLKSTKQERDDLQKRLQESSDKQKVQGKELKEADSQRKMAMQEFAEVSEKVTELRSLKQRLTRQLRDKEEELDSLNQKVEALRLDVRKAERAKKEMEVQAEEWSAEAQKEKKLRERSEQFSRQLEEELDSIKQKHVGRSPSTGSSEQNQELSKLRADLEKKTVHFKEELSRIEQQHANELKSLKKELKESEGQQLSLKKEIMMLKDKLDKSRRESHSERDELEFERVLLSEENKKLSSELDKLSCSNKQLEEKIRVLADEKESVAHWEAQITEIIQWVSDEKDARGYLQALATKMTEELEGLKNASLGARATDMPWKVRRLAKLDMSARLELQSALDAEIKAKQTIQDELNKVKASHMATECKLEESEKQNQDLQAEIQRLKQETDNLRMSKGVKHQDSQNSFLAFLNAPTSALDQFDRSTASGPAGKGRRIDSIDNFSLSNTPSREEDGRSQATSHSRSPSTTSDVESHEVDQPQRGAQTPVRSGYSSSAHSIPKPKAHQFVVKTFNTPTKCNQCTSLMVGIIRQGCTCEVCNFSCHVTCADKAPAVCPIPPDQTKGPLGIDPQKGIGTAYEGHVKVPKPLGVKKGWQRAIAVVCDFKLFLYDLPEGKAAQPGVVVNQVIDMRDEEFSVSPVLASDVIHANRKDIPCIFRVTASQLCASSNKKCSILILADSDQERTKWVGLLKELHRLLKKSKLKERFVYVPKEAYDCALPLIKTTQSAAIIDHERIALGNEEGLYVIHVTKDEIIKVGDNKKVHQIELIPSEQLIAVISGRNGHVRLYPMTALDDRDVESYKIAETKGCQTLLSGTIRHGSLTCLFVAMKKPDKVIVYELNKSKARHRKLREILVPGSVQWMGLQGEKLCVGFQSGFLRYSLQGDGGTSSLLHPDDHTLGFIEQLGLDSLCAVEISSKELLLCFSSIGIYVDYQGRRSRQQELMWPATPTACRYNAPYLSVYSENAVDVFDVNTMEWIQTIPLKKVHPLNSDGSLNLLGLETVRLIYFKNKTAEGDELVVPETSDNSRKQMVRSTASKRRFSFRIPEEERVLQRREMLRDPEIRNKLISNPTNFNHVVHMGPGDGIQILKELPMNMRSQESRGVLGASVSIPSISRTRPEPGRSMSASSGLGTRSSSQNGSALRQDFSVGNYGSTKRQMTSPSDGSLSSGGGMDCGGDAPLSQFDREWPGVSPTEKTPDLKRALRTLLSKLKDSESPRHSTASNSSNLSSPPSPSSPHKSKTQSLERGEHLGWGT"

     polyA_site      14984
                     /gene="cdc42bpaa"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atgtttctcctcgtcattcctgaaagctgaaacagactcagttgcggcgggcagatgagagggaatcaccccgtcacccctcatccacacctccatcctcctcttcatcttcaccccatcatcttcttcatcctctgacggacttcatcccgtgggcaggacatactttttgaggaattatacatggggaaaagactgtggaaaactaagccacactcaatcggtgcctttggagaacttcgctaaactcacttttcgaggatattaacgtattttatccacctcttccacacagatatcctacaaatatcacacttgggggcgtgtcatgttatttccgatggttttggtgtgaattctctttgaggacgagctaaaatcgttagcctgctagccgaacgtctttattagctggatcattagcaccagtaattttaaccagttaaagttgatcaaactgaaggcatttcaaagttgaaatacttgacatggtttggcactcgcgtgtgttattataaatacacgattttttgtgtttatatttgagaaaaacacttcagatgcattgtgtcgagagaatgttgttagcgcgttagctcgagtggctagataaaggcacttaaatatttgtaaatttatatttgcggaaggcaagatatcatttacattttcacccaaaagtgcgagaagtttttaggataaatgacttaatttgctattttccaatttattgcctggtatgttgatctttcactgagtacattagaaaatgtaacgttaatattagtgagaagttttatttgtgtatgaaattacaaatatttacttgactgcagtcttgagactgcattttactgtgatgatgggagggttatgtttatagccctctgcacaccccttcaaagagtattcacatctactttttttaaagaatagtacactacatttttggactgactagttttgaaccatgtctggggaagtgcgtttgaaaaagctggaaaaactgatcctggatggtcctgtccaggctaatggacagtgttttagtgtggaaagtcttctggatgttctcatctgcatttatgatgagtgcaccaactccccactgagaagagagaaaaatgttgctgagtttttggaatgggccaaaccgttcacctctaaagtgaaacagatgcgattgcacaaggaggacttcgagatactgaaggtcattggtcgaggagctttcggcgaggtagcagttgtaaaggtgaaaagttcagacaaggtgtttgccatgaagatcctcaacaagtgggagatgctgaaacgagcagagacagcatgttttcgggaggaacgggatgtgctggtgaacggggacagtcagtggatcaccacactacactacgcttttcaggatgacaacttcctgtacctggtgatggattactatgtgggcggtgacctcttgactctcctcagcaagtttgaggatcgtttaccagaggacatggcccgcttctacctggcggagatggttctggccatcgattctgtgcatcagctccattacgtccacagagacattaagccagataacatcctcatagatgtgaacggacatattcgactcgcagatttcggctcctgtctgaaactcacggaggatggaacgacagctcggcaggatttccccccgacttctgacaagagcagagtgcagtcgtctgttgctgtgggcacgccagactacatctctcctgagatcctgcaggccatggaggatgggaaagggaaatatggccctgaatgtgactggtggtcactgggtgtttgcatgtatgaaatgctctatggggaaactcctttctatgctgagtccctggtggaaacctatggcaagattatgaaccacaaggaacggttccagtttcctgctcaaatgacggacgtgtctgaaaatgccaaagatctgatccgcagactcatctgctgcagagagcacaggctagggcagaacggcatcgaggacttcaaacaacaccccttcttctctggcattgactggcagaacatccgcaactgtgacgccccctacatccctgaagtcagcagcccgtctgacacatcaaactttgacgtggacgacgactgcctcaagaacacggagacgatgccacctccttcccacaccgctttttcaggacaccatctcccatttgttggattcacctacaccagcaactgtacactctctgatcggggttgcctgcgtgagtctgcggctccagcacagatggatgtttgtgttcagcgcggcctggaggacagtctggccactgaggcgtacgagaggaggattcgccgtctggagcaggagaaactggagctcggtcgcaagctacaagagtccacaaaagcggtacaggctctgcagtattccagctcggatgggcctgtttcctccaacagagagtttgagatccgcggactgaaggaggagatagaaatgctaaaaaaacagattgcagatacaggacaggtggagcagcagctggaacaagccatttctgcacgcagtgatatggaggactcctccaaacagatccggtctctggaaaaacagctcaagagcacaaagcaggagagagatgacctgcagaagcgtctgcaggagtcctcagacaagcagaaagttcaggggaaggagctgaaggaggccgacagtcagaggaaaatggccatgcaggagtttgcggaggtgagcgagaaagtgacggagctgaggtcactcaaacagcgtctgacccgacagctacgggacaaagaggaggagctggattcactcaatcagaaggtggaggcgcttcggctggatgtgcgcaaagcagagagagccaagaaagagatggaggtccaggctgaagagtggtctgctgaggctcagaaagagaagaagttgagggagcgcagcgagcagttcagcagacagctggaagaagagctggacagcatcaagcagaagcatgtgggccgctctccaagcacggggtcgtctgagcagaaccaagagcttagtaaactacgagcagacctggaaaagaagacggtgcacttcaaagaagagctttcccgcatagaacagcaacatgccaatgaactgaagagcctgaagaaggaactgaaagagtcagagggacagcagctcagcttgaagaaagagatcatgatgcttaaagacaagctggacaagtcccgcagagagagtcatagcgaacgagacgagcttgagtttgagcgagtgctgctgtctgaagaaaacaagaaactgtccagtgaactcgacaagttgagctgcagtaacaaacagctggaggagaagattagagtactggctgatgagaaagagagcgtggctcactgggaggcccaaatcacagaaatcattcagtgggtcagtgatgagaaagatgctcgaggatatctgcaggctttggccactaagatgacagaggaactggaaggcctgaagaatgccagtttgggtgcacgtgccactgacatgccatggaaggtgagacgtctggccaaactggatatgtctgcccgtctggaactgcagtctgcactggatgctgagattaaagccaaacaaaccatccaggatgagctcaacaaagtcaaggcatcccatatggctactgagtgcaaactggaggagtcggaaaagcaaaaccaggacctgcaggcagagatccagaggctgaaacaagaaacggacaatctgcgcatgtctaaaggtgtcaagcaccaagactcccagaattccttcctggcattcctcaatgctccaacctcagctctggatcagtttgatcgctccactgccagtgggccggctggtaaaggcagacgtattgattccattgataacttcagcctctccaacacaccgtcacgggaggaagatggaagatcccaggcgacgtcccactctcgctcgccctctaccactagcgacgtggagtctcatgaggtagatcagccacagcgaggtgcacaaactcctgtacgatcaggatacagcagctccgctcacagcatacctaaaccaaaagcccatcagtttgtggtgaaaaccttcaacacacctactaaatgtaaccagtgtacgtctctgatggtggggatcatccgtcagggctgcacgtgtgaagtctgtaacttctcctgtcatgtgacgtgtgcggataaagctcccgctgtgtgcccgatcccaccagatcaaaccaaaggaccgctcggcatcgaccctcagaagggcatcggcacagcatatgagggccacgtaaaggtgcccaaacctttaggcgtgaaaaagggatggcagagggccattgctgtggtctgtgacttcaaactcttcttatatgatctcccggaaggcaaagctgctcagcctggtgtcgtggtgaaccaggtcattgacatgagggatgaggaattttctgttagccctgttttggcgtcagatgtcattcatgcaaacaggaaggatattccctgtatcttcagagtgacagcatcacagctctgcgcctccagcaataaaaaatgctccattttgatcctggccgacagcgatcaggaaagaacaaagtgggtcggccttttgaaggagctgcaccggctcttgaagaaaagcaaactgaaagaacgctttgtttacgtccctaaagaagcatatgactgcgcactgcctctcatcaaaaccacacagtctgctgctattatagatcatgagaggattgctctgggaaacgaggaggggttatacgttattcatgttaccaaagatgaaattatcaaagtaggggacaacaaaaaggttcatcaaatcgaactgatcccatcagagcagttgattgctgtgatatccggccgaaatggccacgtgcgcttatacccaatgacggcactggatgatcgcgatgtcgaatcctacaagatag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