LOCUS       XM_017357727            2629 bp    mRNA    linear   VRT 15-JUN-2017
DEFINITION  PREDICTED: Danio rerio pbx/knotted 1 homeobox 1.1 (pknox1.1),
            transcript variant X1, mRNA.
ACCESSION   XM_017357727
VERSION     XM_017357727.2
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007120.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jun 15, 2017 this sequence version replaced XM_017357727.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Danio rerio Annotation Release 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="9"
     gene            1..2629
                     /gene="pknox1.1"
                     /gene_synonym="fc13f10; prep1; prep1.1; wu:fc13f10"
                     /note="pbx/knotted 1 homeobox 1.1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 26
                     ESTs, 5 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 144
                     samples with support for all annotated introns"
                     /db_xref="GeneID:798151"
                     /db_xref="ZFIN:ZDB-GENE-020122-5"
     CDS             375..1676
                     /gene="pknox1.1"
                     /gene_synonym="fc13f10; prep1; prep1.1; wu:fc13f10"
                     /codon_start=1
                     /product="homeobox protein PKNOX1 isoform X1"
                     /protein_id="XP_017213216.1"
                     /db_xref="GeneID:798151"
                     /db_xref="ZFIN:ZDB-GENE-020122-5"
                     /translation="

MMAAQSVSIDKYPEGDQQMQVMEQSENDLKKGFSNGNTGNTSSPVSNEPQTQMDIDKACIYRHPLFPLLALLFEKCEQSTLGSDCVTSASFDVDIENFVRSQEKDGKAFFSEDPDLDNLMVKAIQVLRIHLLELEKVSDLCKDFCSRYISCLKAKMNSETLLSGDPGSPYSPVHDQLSNPFSGPLSPQSLLIPSSGLQQGSVTVTTVNSSQVATGNTVYQPVTVVTPQGQVVTQAISPGALHIQNSQLQLQLNQDLSFFGGDDSSPKNKRGVLPKQATNVMRSWLFQHIAHPYPTEEEKKQIATQTNLTLLQVNNWFINARRRILQPMLDANSTEASKSKKKVAQSRPLHRFWSDSIASTGSQQQLTMPDGSLVTVGMNVDGFQALSSDGATLAMQQVLMGNHSEDETDESGNEDDTDMSTANMPGLGLDVSD"

     misc_feature    618..875
                     /gene="pknox1.1"
                     /gene_synonym="fc13f10; prep1; prep1.1; wu:fc13f10"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(1173..1187,1191..1193,1251..1253,1269..1271,
                     1308..1310,1314..1319,1326..1331,1335..1343)
                     /gene="pknox1.1"
                     /gene_synonym="fc13f10; prep1; prep1.1; wu:fc13f10"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(1179..1181,1188..1190,1317..1319,1326..1331,
                     1338..1340)
                     /gene="pknox1.1"
                     /gene_synonym="fc13f10; prep1; prep1.1; wu:fc13f10"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1227..1343
                     /gene="pknox1.1"
                     /gene_synonym="fc13f10; prep1; prep1.1; wu:fc13f10"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
ORIGIN      

gctcaatgcttgtagagggttttattatattttatgcagatgcacttctctacagaatcatcccaatcaatacaaagtattaaatctttctaaatagagatattcaacaagtcacctggtgaaattgtattcatatcgccaaaatatattgcaatgttagatttgtccaaaatcagtagctctagctggacggttcaagtgaacaaaaaatcccaagtggagaattgttaatatttttttaaagcaaaagaaaaaagtgataatattattagtggaggccttttttttttaaagaaagatttaatgttacctttaggtcctctcctgctgcctgtccatataatgtcccagtgttggcagtggccattttgaatatgatggctgcccagtctgtgtccatagacaaatacccagagggagaccagcagatgcaggtaatggagcagtcagagaatgaccttaaaaagggcttttccaatggaaacacaggaaacacaagcagccctgtatccaatgaaccacaaacacaaatggatatcgacaaagcctgtatatatagacatcctcttttccctctcctggctctcctgtttgagaagtgcgaacagtccactctggggtccgactgtgtcacgtctgccagtttcgatgttgacattgagaactttgtacgcagtcaagagaaagacggcaaagccttctttagtgaagaccctgacctcgacaacttgatggtcaaggccatccaggtgctgaggattcatctgttagagctggagaaagtcagtgacctgtgcaaggatttctgcagccgttatatttcatgccttaaggccaagatgaacagcgagacactgctgagtggagatccaggcagcccgtactctccggtccatgaccagttgtccaaccctttctcaggtcccctcagtccccagagtcttctgataccttcgtctggtcttcaacaaggcagtgttacagtgaccacagtcaattcatcacaagtggccacaggtaacaccgtatatcagccagtgacagtggtcacaccacagggacaagtggtgacacaggccatctcacctggagcactacacatccagaactcacagctccaacttcagctcaatcaggacttgagtttcttcgggggagacgacagctcacctaaaaacaaacgtggcgttcttcccaaacaggcaaccaatgtcatgcgctcctggctctttcagcacattgcgcacccgtatcccactgaggaagagaaaaagcaaattgcaactcaaacaaacctgactttacttcaagtcaacaactggtttattaatgctcgaagacgaatactgcagccaatgctggatgccaactcaacagaggcatctaaaagcaagaaaaaggtggctcagagtcgcccgctgcaccgcttctggtccgactccatcgcctctacaggaagccagcagcagctcacaatgccagacgggagtttggttactgtgggaatgaatgttgacggcttccaggcgctttcttcagatggagccactctcgccatgcagcaggtcttgatgggaaatcacagcgaggatgagactgatgaaagcggcaatgaagacgacacagatatgtcaaccgccaacatgcccggtctgggtttagacgtcagcgactaagacgcatggattgcaggtcacacactgcatgcttacatttacattggaaaacttgcagatgatgcttgttgcaagagatccgctccctatgtagattttcagcaaagctgatacttgtgcactacaaaaagaattaagtactgtatgttgacctttatgttacacaaaacacaagtgaacagtttacagagagcacaacgttactgaaagcagcaaaccgaggagtgtcatttttaccacaaagaggtttgtgcacttttatacagatacacttggagaagactgcagaaatggaggacggaggaaccttttgaaactcctttagtgaatgtttggtcaattttgttttctgtattaactcatttggatgccaagagtgtgtcgtcgtgctggttttattcccactgcatgtttgtgttctcttcagtatgctcacgcttgtagagactccaagacggagtttgagaaaagagattatttttatatataaacgttgtataaaagtgttgtttttcttttgctgttttttttagtgttttatagggaatatttatgtacagaaacgatactatctgccctgttttcaggggatgagtttttcttcttgtttttagaaaaacaaacaaaaaaaagatcttggagttaaaccattgtttcaatttgtgaattggttttaacactcgcgtacaaaatgccttacacgtccttttgtaaaactcttttgctgataagcacagaaatccggatgcattgatgaaattgagtaatatctgttcaagtctcttccagtaatctttccttcgtttcagagggatctctgtttttgctctgtaggctgatgtagtttgatctcacatgtgcaaagcttatcaatcagattcatgaaagaagctttggaaatgaaaatggcataaaatgtccattattgaagtcaaataaaggtcaagtctgaa

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