LOCUS       XM_017356616            7205 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio trinucleotide repeat containing adaptor 6C2
            (tnrc6c2), transcript variant X2, mRNA.
ACCESSION   XM_017356616
VERSION     XM_017356616.3
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_018394637.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_017356616.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7205
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="6"
                     /map="unlocalized"
     gene            1..7205
                     /gene="tnrc6c2"
                     /note="trinucleotide repeat containing adaptor 6C2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 58 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 82 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100149391"
                     /db_xref="ZFIN:ZDB-GENE-061207-48"
     misc_feature    1
                     /gene="tnrc6c2"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             1186..5790
                     /gene="tnrc6c2"
                     /codon_start=1
                     /product="trinucleotide repeat-containing gene 6C protein
                     isoform X2"
                     /protein_id="XP_017212105.2"
                     /db_xref="GeneID:100149391"
                     /db_xref="ZFIN:ZDB-GENE-061207-48"
                     /translation="

MATGASPQGHYPISKASVNLSSSMVSNHGGPTRGWASEGKTDLSMGSRGQSSWGASNLNLNPSANPAAWPALGHEGPAVGSGPSSMVCSNPLSLSMCGQGGVAPPHGTNGNGNIGCVNENLVGDCAWGNPDIPEQHQSPTNVSFNMKPPILKTDGPNNTNPEPMSPVNSWRGNLSQSPTEPASKDGTAFWGSGNAKNGESKDSGWDSVGVSSWGQGGASRGSRGWGDWGKQPSTEGTEWDANEAPSQEHMSSWGPDTPASEGSRDSSEGHPRKRERSSSADLVPLLPKQDLDPRVLCNSGWGQTPVRQHTVWEMEASTDKKNDVGTEDWGSSSNTASTEPPPPPPGCANSNISPPPRMDTSKSEGHCRVMPNAGWGGSVPVSAQPNSGWGEPSANKKVSNGSGCNWGDPNPVAPNISGCNGQSWASEEKSPSWNDCTSQKTTQNWGDGPKSSSGWGSSGCANSGEWGESSEMKNSSGSSSWEPDSRKCKETQRGWTKASPAQSGCWGEAQHTNGSTQGWGGKLQESMCGNNGSGGIGSWGGPNSVKQSNSGWSSRCRQETGDESTGWEEPSPSSVRRKMDIDDGTSTWGDPSAYSKSVNMWDRNHSQNHPGTNNSGNGNNLSVPNSANHPQRQGPTQNHVSGSNNNASPSQGECPLNRISMVNPGWGEIPKVQPNTEPSSWGETASSSSSVDNGTSAWGQSSRGRGGWSEGSRDSSGSYGRGNAPAVSSPCQEGPKPMQDGWGSGGEEMGMNTSQWNADDGDMWNSPTSQDSTCNSWGHSRKGPQRVKVSNKQDDVWIMNRLIKQLTDMGFPKDPAEEALKSNNMNLDQAMSALLEKKNELDKRGMGTSDYSNGLNKPMVCRPTNLSKDSSLDHSPFLDKDGRLSDDSSSSPFMPSPGLKLPLASSSLPNHGLGGVSSGLSMQNLNNRQMHNGMFGTNGAAQTRVMQQQAPPPQPPVPPLSSTQPNLRAQVPQLLTPQVQAQLLQFAAKNIGLNPALLTSPINPQQMTLLYQLQQLQVAYQRLQIQQQMMQAQRNVSGPIKQQEQQVARTITNMQQQIQQHQRQLAQALLMKQQQPPPSSHTGLHQNLGKASQDSFTAGLNPNMNVNCMEVGSLSLKDPPQPQSRLSQWTHPNSIDSLTASTQHMEANLSKHGSISAAQSHVPAGKSSMEDSFSPYNMMSSSESPSNTLVSPESWTQGKSPNEKIASGSNISWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPNGPTINTNIQDVNRYLLRDRTGGKLLEMKSTWSPGPISHTQASLSQELWKVSPGTRNSSAPSRPPPGLTNTKPSSTWGGNSLGLSQGWNNSYSSEGGTWSSDSPNRGSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFASEEDVNRFFAQGQSLTPTTSWQASPAPGSSQPRLGNPTASHPTGLWSGGGGTKTVCSAGNSSSGNGGDMLWGGVPQYSSLWAPPNGDDARVIGSPIPINTLLPGDLLSGESM"

     misc_feature    3244..3576
                     /gene="tnrc6c2"
                     /note="Argonaute hook; Region: Ago_hook; pfam10427"
                     /db_xref="CDD:463088"
     misc_feature    3583..3696
                     /gene="tnrc6c2"
                     /note="UBA domain found in trinucleotide repeat-containing
                     gene 6C protein (TNRC6C) and similar proteins; Region:
                     UBA_TNR6C; cd14283"
                     /db_xref="CDD:270469"
     misc_feature    3877..4473
                     /gene="tnrc6c2"
                     /note="M domain of GW182; Region: M_domain; pfam12938"
                     /db_xref="CDD:432890"
     misc_feature    4477..5232
                     /gene="tnrc6c2"
                     /note="TNRC6-PABC binding domain; Region: TNRC6-PABC_bdg;
                     pfam16608"
                     /db_xref="CDD:465195"
     misc_feature    5221..5484
                     /gene="tnrc6c2"
                     /note="RNA recognition motif (RRM) found in vertebrate
                     trinucleotide repeat-containing gene 6C protein (TNRC6C);
                     Region: RRM_TNRC6C; cd12713"
                     /db_xref="CDD:410112"
     polyA_site      7205
                     /gene="tnrc6c2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gaacaaaatggctgcagaggcttgatcttgacccgatgctttcagcgctctcttcggacactccgcacttattcctggatatatgcgctgtcgttttaaaacacatctctggatttctgaacgcaattgcagccagactgctcgctacactgttcgctatctttaattttgcactttactgaagcagctcgcctcgtataatctcatgacagcagcagcttcaaactgccctcttcttcattttgcaccgtacgttagatcaaatgctaatactgatgacaaatgtatgtcactgtactttacaaactgcctcgcctttttaatgtgacgttattttgttctatattttaatcgtgtttgataacgtatatgtcatgtattttatttcaatcatgcatgcatcttaatctccatcagagccaaaagctccaagtctgcataaatattttataacagacgtctttcgttttcagtttaaattttgcatttctttttattctgctgcctttttctggagacatttcggaatctcagctgctcgttcaggacagtgttaacgttactttgttttacgggtactttcgtgggaaaaggccttttgtaccattgtacaacatgcaacactttttttaacgaaagctgccaaagctcgacttgtgatcaaaaagtgccagactctttaaaacctaatcccagtgtcccttcaggcccattctgaccctcaatctgcctgtaacctctgcagctactaccagcaatggcaagtgtagcccttgtattgccctacaacagcagttacctccattacagcagctcagtcctcgatatgtgccaagagaggttcctccacgcttccgacagcagaagcagaggcagctactgaacgagggtcgacctttacctagtggcgtgcataacacaaactctacttgccctcctctagagacagccaccagcaaacagctcacgggacttccacatcaaagtgacctgggagatcagcatgagaattgtgattggagcagcactgtcaccaaaggcagcagtgggaaccgggataaagtgattattaacaacaaagacatttggccttccattacatatagcaagagccggcaaacaccagaatgcatcttggacactaaacgcacaccagaggttgttagcaacagtagcaacactattatggctacaggagctagcccacagggtcattacccaataagcaaagctagcgttaatctctcttctagcatggtgtctaatcatggtggccctaccagggggtgggcctcagaaggaaagactgacttgtccatggggagtagagggcagtctagctggggtgcctcaaatctaaacctaaaccccagtgctaaccctgctgcttggccagctcttggacatgaagggcctgcagttgggtcaggacctagtagcatggtttgctcaaatcctctttcacttagtatgtgtggccaaggaggagtggcaccacctcatggcaccaatggaaatgggaacattggttgtgtcaatgaaaaccttgtaggggactgtgcatggggcaacccagatatcccagaacaacatcagtcacctacaaatgtatccttcaacatgaaacctcctatccttaaaactgatggaccaaataacactaatccagagccaatgagtccagtgaacagctggagaggaaacctcagccagtcacctactgagcctgccagcaaggatggaactgcgttctggggcagtggaaatgccaaaaatggagaatcaaaggactcagggtgggattctgtgggtgtctcttcctggggtcagggaggagctagcagaggcagtcgtggctggggtgactggggtaaacagccaagcactgaaggtacagaatgggatgctaatgaagctccttcccaggaacatatgagttcatggggtcctgatactccagcaagtgagggcagcagggatagcagtgagggccacccaaggaaaagagaaagatcctcaagtgctgatttggtccctttgcttccaaagcaagacttagatccacgtgttctttgcaactcaggctgggggcagactccagttcgtcaacacactgtttgggaaatggaagcaagtacagacaaaaaaaatgatgtagggactgaggactgggggtcttcctccaacacagcgtcaactgaacctccaccacctcctcctgggtgtgccaattctaacatcagtccacctcctagaatggatacaagcaagagtgagggacattgcagagtcatgccaaatgcaggctggggaggatcagtcccagtctctgctcagcctaacagtggatggggagagccttcagcaaataaaaaggtttccaatggatcaggatgtaactggggtgatcctaatcctgtggctcccaacattagtggctgtaatggccagtcttgggcttctgaagaaaaatctcctagctggaatgattgtacttctcagaagacaacacaaaattggggtgatggacccaaatcttcctcaggttggggaagtagtggttgtgcgaatagtggggagtggggtgaatcttcagaaatgaagaatagctctggaagttcatcttgggaacctgacagcagaaaatgtaaagaaactcagagaggctggactaaagcatcaccagcacagagtggttgttggggtgaagctcaacataccaatggttcaacacaaggatggggtggaaaacttcaggaatccatgtgtggcaacaatggatctggaggcataggatcatggggtggccctaattctgtcaaacagagtaactctggctggtcatcaagatgccgccaggaaacaggagatgagtccacaggctgggaagaaccctctccttcttctgttcgtcgcaaaatggatattgatgatgggacatccacttggggtgaccccagtgcttacagcaagagtgtgaatatgtgggacaggaatcactcccagaatcatccaggaacaaacaacagtggtaacggtaataacctgtctgtgccaaacagcgctaatcatccccaaaggcaaggacccacacagaaccatgtcagtggaagcaacaacaacgcctcacccagtcaaggtgaatgtcctctcaacaggatttccatggtgaacccaggctggggagagatccctaaagttcagccaaatacagagccctcttcatggggcgagacagccagttccagctcctctgtggacaatggtacttcagcttggggccaatcttctaggggccgtgggggatggagtgaaggtagccgtgactcaagtgggtcttatggcagaggaaatgcacctgctgtatcaagcccctgtcaggaaggtcccaaacctatgcaagatggctggggatctggcggggaagagatgggcatgaacaccagtcaatggaatgctgatgatggtgacatgtggaacagtcccacatcccaagactccacttgtaactcctggggtcattccagaaagggcccacaaagggtcaaggtctctaacaagcaggatgacgtttggatcatgaacaggcttattaagcaacttacagatatgggttttccgaaggatcctgcagaagaagccctgaagagtaacaacatgaatttggatcaggccatgagcgctttgttggagaaaaaaaatgaactggacaaacgggggatgggcacttcagactacagtaatggattaaataagcccatggtgtgccgacccacaaacctctctaaagactcctcactggatcactcccccttcctggacaaggatggcaggctgtcagacgattcttcatcctcaccgtttatgccttctcctggcctcaagctcccactggccagtagcagcctcccgaaccatgggttaggtggggtctcttctggtctgtccatgcaaaacttgaacaatagacagatgcataatggaatgtttggcactaacggagcagcacaaactcgggtcatgcagcagcaggccccgccccctcagccaccagtgccacctctgagctccacccagcctaacctgcgtgctcaagtgcctcagcttctcacccctcaggttcaagcacagctcttacagtttgcggcaaaaaacatcggtctgaatcctgcacttttaacctcaccaataaatcctcaacaaatgaccctgctgtaccaactacaacaactgcaagtggcgtatcagcgtttgcagattcagcagcaaatgatgcaggctcagcgtaatgtctctggtcccatcaagcaacaagagcagcaggttgcacgtacaatcacaaacatgcagcagcagatccagcagcatcagcgtcagctggcccaggccctgctcatgaaacagcagcagcctccaccatcctctcacacaggcctgcaccaaaaccttggcaaggcaagccaggacagcttcacagctggtttgaacccgaacatgaatgtaaactgtatggaggtgggaagtctctctctgaaagaccctcctcagcctcagtccagactctcacagtggactcacccaaactccatagattctctaacagcaagcactcagcacatggaggcaaacctcagtaaacacggttcaatatctgctgctcagtcccatgtgcctgctgggaagagctctatggaagattccttcagcccatacaatatgatgtcaagttctgaatcacccagcaacacattggtgtctccggagagctggacacagggcaaaagtcccaatgagaaaattgcaagtggctccaatattagctggcctccagagttctgccctggagtgccgtggaaaggtctgcagaacattgatcctgagaatgatcctaacatgaccccaggaagcgttccaaatggccccaccattaacactaacatacaggatgtgaatcgctacctgttacgtgacaggactggaggtaaactcttggaaatgaagtctacctggtcccctggacccatctcccatacacaggcctctttatctcaagagttatggaaggtttccccagggactcgaaactccagtgctccttctcgccctcctccaggactgaccaacaccaagccctcctccacttggggaggaaattctcttggcctcagccaaggctggaacaactcttactcctcagaagggggaacttggagctctgacagtccaaacagaggaagcagctggttggtgctgagaaacctcactcctcagattgatggctccactctgcggactctgtgcatgcagcacggccctctcattaccttccatctgaacctgacacagggaaatgctgttgtacgttacagctccaaggaggaggctgccaaagcccagaaatccctgcacatgtgtgtgttgggtaacactactatcctggcagagtttgccagcgaggaggatgtgaaccgcttctttgcacagggccagtctcttacccccaccactagctggcaggccagcccagcaccaggctccagtcaaccccgactgggcaaccctactgctagccaccccacaggcctctggagcggaggaggaggcaccaagacagtctgcagtgctgggaacagcagcagcggaaatggaggcgacatgctctggggtggtgtgccacagtactccagtttatgggctcccccaaacggagacgatgccagggtaatcggcagccccatcccaataaatactctgctcccaggagacctgctgagtggagagagcatgtaggatgcatcagacatcataaaccaacaaagtcaaaagacccaacggatcaaatctcaagcaaatcaatgtggcgataatcactttttgtcgaactctaccagaggttgaaggggagacagctgcaaacctccaactgctgtttttttacgtcagactatttggtgtgttcgtggatcttcgtattcaaagacgttgacaaacataaatcaatagaagcagagctttttgatgctttttttgtttccaaagattgtttttgttcaaaactgttgttcaggagaagccaccaaagtggcagccatctgaaaacgacccaggcacagtgagacctcatgacacctttccctataatgacactcttctgatgattggaatgatccttgtactttttggtttgaaaatctgcatcactttttcacaactatttagccgtaagtgctctctctccatgacctcctaaagttttattttataagaacaacaacatcaaccaatttcctaagttgcacagttctgtttctgagccagcgaataggccagagctaatgagcagtggcctgtcagcatgactaatcaccaatgatacgtttcgtctttaattctgttcgtaattaaaagggagctgcactgctctgttgcgttttactcacactctttttttttttttttcgtttaatatgtgtatggttaaataagctgaatgttaagcttcgatttagatgaatgaatgtcattgtgtctgctggaacttgaccaagcatctgtgtgtgagtactttaccactgttaaaaacactcagtggatgctttttaatgatacctaaacgacttcagtgctgaatcaatcaaacgctattcagttactatgtggtcagccatttttaatgagatgcaacagagaattcattctgatgcattgtgcaatagaagccagagacgctttcttccgtccacactgaagcttactgaaactgttttttttcttgtttttgctgaagactatagcagaattgaatctttagactcatttttccgccttgccttgaactgtttgtctgcctttctggctgttcactagtatatttgtggaaaggaggaactgttaactgtgtttgtcatcactccatgcggtttaccacttggcatgtgtgggatgccacagtctcccagccacatctcttcaccaaacagaaatggaatccagagcgggagacacatggctcggaagtcaggcacaataccaaatacaatgcgtttctcttaatgcagtacagaataagagattcttgcgtttggtacaaacataaaagacatgtacattttataagtcacttcttaaaggggtattagcaaagcacttattacaagagcagtgctccttctgaaagccaataaatcagttgatggagcgtattg

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