LOCUS       XM_017354516            5991 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio RNA-binding protein MEX3B (LOC100534722),
            mRNA.
ACCESSION   XM_017354516
VERSION     XM_017354516.3
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq; corrected model.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_003336974.1) and transcript sequence (GDQH01005078.1) annotated
            using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_017354516.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            assembly gap :: added 832 transcript bases to patch genome assembly
                            gap
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-832               GDQH01005078.1     2817-3648           c
            833-5991            CABZ01080015.1     4182-9340           c
FEATURES             Location/Qualifiers
     source          1..5991
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="Unknown"
     gene            1..5991
                     /gene="LOC100534722"
                     /note="RNA-binding protein MEX3B; The sequence of the
                     model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     added 832 bases not found in genome assembly; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 829 long SRA reads, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments"
                     /db_xref="GeneID:100534722"
     CDS             381..2138
                     /gene="LOC100534722"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: added 452 bases not found in
                     genome assembly"
                     /codon_start=1
                     /product="RNA-binding protein MEX3B"
                     /protein_id="XP_017210005.1"
                     /db_xref="GeneID:100534722"
                     /translation="

MPSPLFHPDIMEHESGQSGGGAREMEQDPRDEEHQEALRFALDQLSRMALEKVECLDGSSAGESCNGGGGYVDLQMMEHSSGSRESPGSCSPSPEYYGSGGGGGGGGYHMAGPHSSILGEQSSVLRKRSVNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFIVTGRREDVEMAKREIISAAEHFSMIRASRCKAGASAPGSSGSLPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQTHTYIVTPSREKDPVFEVTGMPENVDRAREEIETHITLRTGAFVDLQGDNDFHSNGTDVSLEGLGALGLSGALWSRATHNSAAPPPAMHRKTSFSNAESFSTTRRAADGGSPTSPFSTSSAGGSFSFGGDSTPSLPATNEDLGFEFGAANIWAPFVNGAKQPPQPVRRNSSGLSGGAVTPRLSPDPDHPLARRAQSDPLSTLSWLQNGGGGGSFSGGSSSSSGGSTTGYSSCSASSLPGGSPTDSEGGGSGVGISATMLSRLKAGALAGMVPRDCYVCCESEVTAALVPCGHNLFCMDCAGQICQSSDAECPVCHTPATQCIRIFS"

     misc_feature    774..992
                     /gene="LOC100534722"
                     /note="first type I K homology (KH) RNA-binding domain
                     found in the family of MEX-3 RNA-binding proteins; Region:
                     KH-I_MEX3_rpt1; cd22423"
                     /db_xref="CDD:411851"
     misc_feature    order(801..806,810..818,822..836,840..848,855..857,
                     873..893,975..980,987..992)
                     /gene="LOC100534722"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:411851"
     misc_feature    1062..1277
                     /gene="LOC100534722"
                     /note="second type I K homology (KH) RNA-binding domain
                     found in the family of MEX-3 RNA-binding proteins; Region:
                     KH-I_MEX3_rpt2; cd22424"
                     /db_xref="CDD:411852"
     misc_feature    order(1098..1100,1104..1112,1116..1130,1137..1142,
                     1149..1151,1167..1187,1272..1274)
                     /gene="LOC100534722"
                     /note="RNA binding site [nucleotide binding]; other site"
                     /db_xref="CDD:411852"
     misc_feature    1974..2132
                     /gene="LOC100534722"
                     /note="RING finger, HC subclass, found in RNA-binding
                     proteins of the evolutionarily-conserved MEX-3 family;
                     Region: RING-HC_MEX3; cd16518"
                     /db_xref="CDD:438181"
     polyA_site      5991
                     /gene="LOC100534722"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

gagacgcgtgtgtgagtgagtgattctgctgcacagacagacaaaggcggcggaccggaggaaccgacagaaagcgctctaagagtctccagacttccacgcgtgaaaacccgcagaaaaccatgagcagatcccgggtgcgagcggtgccgaggcgggacgagtgatccgagccgcgctggagctccagtttgaccgcgaatgctttaaaagcgactctttttctccaacgccccccaaaaacagttagcagctagcggttagccgtcccctccaccagcctcatcctccagaaaactgcggaaaacagcagccggcggcgcgggagcacacacgaaagcacagtctgctgggtgtctgatgcgcacgcggggtcgactatgccgagtcccctgtttcaccctgacatcatggagcacgagagcgggcagagcggcggcggcgcccgggagatggagcaggatccccgggatgaggagcaccaggaggcgctgcgcttcgccctggaccagctgtcccgcatggcgctggagaaggtggagtgtctggacgggagctcggctggggagagctgtaacggaggagggggttacgtggacctgcagatgatggagcacagcagcggctcgcgggagtcacccggctcatgctcgccctctcctgagtactacggctctgggggtggaggtggtggtggaggatatcacatggccgggccgcactcctccatcctcggggaacaaagctcggtgctccgcaagagaagtgtcaacatgaccgagtgcgtgcccgtgccctcctctgagcatgtggcggagatcgtcggtagacaaggttgcaagatcaaagcattacgcgcaaaaacaaacacgtacatcaaaaccccggtgcgaggagaagagccggtgttcatcgtgacgggacggcgtgaagatgtggaaatggccaaacgggagatcatctccgccgctgagcacttctccatgatcagagcctcacgctgcaaagccggcgccagcgctcccgggtccagcggctcactccctggcccgccaaacctgccaggacagaccaccatacaggtgcgcgtgccctacagagtcgtgggcttagtagtaggccctaaaggagccacgatcaagcgcatccagcaacagacgcacacctacatcgtaacaccgagccgagagaaagatcctgtgtttgaggtcacaggcatgccagaaaacgtagaccgtgcccgagaggagatcgaaacacatataactctacgcaccggcgcattcgtggatctccaaggcgataatgacttccatagcaacgggacggatgttagtttagagggtttgggtgcgctgggattgagcggtgctctttggtcacgtgcaactcacaattctgcggctccgccgcctgccatgcatcgcaaaacgtccttctcgaacgcggagtcgttttccactacacgccgcgcagcagacggaggaagcccgacgagtcccttcagcaccagcagcgcagggggaagcttctcttttggaggcgactcgactcctagtttgccggcgaccaatgaagatttgggtttcgagtttggcgctgctaatatttgggcgccgtttgttaacggtgcaaagcagccgcctcagcctgtccggcgcaatagcagcggcctcagcggtggagctgtaactccacgtctatcacccgaccccgatcaccctctcgcccgcagagcccaaagcgacccgctcagcactctctcctggctccaaaatggcggcggcggcggatcgttttctggaggaagcagcagcagtagtggaggaagcacaaccgggtattcgtcctgctctgcgtcgtcgcttcctggtggatctccgaccgactctgaaggcggcggcagtggtgttggcatctctgctactatgctgagtcgcctgaaagcaggcgctctagctggaatggttcctcgagattgttacgtgtgctgcgagagcgaggtgactgctgcgctggtgccctgcggacacaatctgttctgcatggactgcgccggtcagatctgccagtcttctgacgccgagtgcccggtgtgccacactcctgccacacagtgcatccgcatcttctcttaaagaccgccttcataggagcgaccgcaatgattagatatgacactattcttgatttattgacaataataataatgatgatgatgataataatgacgtcgttacccactcaagtacttgttttatttgtcttactagcgctcatgttcatattcggtgggtttttttctccagctcatgcttccctttttctactcgcagatatttttcaacttttacgctgcacttttttctaatgcattgtgtttgttttttagagggttgccgatttttaaattattttttaaaagttgtttttgtgtgtgtgtgtgtgtgtgtgtgtgcgcattttttaaatgcagcgccagactgcgaacgctcatttagaccaaaacgttgagaggttattcctgtaacacttaatatttatacgtactagttgatgttgaatctgagatagctagagtagtacatgttataagtatcataaccgtgcattttctctttttgccacactaccttaaaacacgacgatgacggtgtgtgttgttcattccagcagtctacactcctgaaacagggttgccagtatttggatgaatctgttacgcttttctgtgccgaagtgaacggcgccctccatcttcaactcgaatgttttttttgtttgtgaatgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtcatcctgatttgtgcactgcgacacactgaaatgtctttggctggagttggagtctgtcttccggctgtcgcacttagtcccgctgtggttttcctcgtccgccgcctataaacgtagccgctgtttctgacatccgtagccccgttttacacacaacaagccatgaactcactctaaagggcttccggttacacactacacttcaggttttcgctaataaacaggatcttcagtcccgctcgagtctgtgtggcagctaaatcacgcagggcttccgtacgttgtttttcctgaaacgcgggggactttttgtttttcagacatcctcgttcgcatgagttgtacagattccattgaggactattaaatgtgccagactttgagagcagtcagctagagctgtggtgatgatcgcaggcattgcaaatcgagaccgtattttgcatcgattctgaaatttcacaaatgcattgcgatcctctcttgaatgcgttctgaaattaggtttgaccaacagatggcgtcgtatgctttacagacagcctccaattcattcacgcaccactcaaagtatagtaaggaaggtttaagggaattacaggagcatgcatagtaagctgtttacgttaatctcatggaattaaagtcaagatgcacctacatttgaccacttgcatgactaatgcacaatacagacttatttctgggtatttgagtctgctgttagctagcatttaagcgccatctgctgttataaactagcctagagcgccatcttctgttaaaaactaacttagagtgccatctgctcttataaaactagcttacagcgccatctgctgttattaaactaggcaagagcgccatctgctgttattaaactaggcaagagcgccatctgctgttattaaactaggcaagagcgccatctgctgttattaaactaggcaagagcgccatctgctcttaaaaaactaggcaagagcgccatctgctgttatttaactaggatacagcgccatctgcagtttaaaaactagcctagagcgccattttctttttatgtctagccaagagcaccatcctctgttacagtctagcctagagcgccatctgctgttatttaactaggatacagcgccatctgctgtttaaaaactagcctagagcgccatttgctttttacgtctagccaagagcaacatcctctgttacaatctagcctagagcaccatctgctgttataaaactagattacagcaccgtctgcggttaaaaaaaaaaaactagcctagatcaccatctgctttctacatctagcctagcgcaccatcctctgttaaaatctagcctagagcgccatctgctgttataaactggcctagagcatcgtctgctgttaaaactagcttagagcacaatgtgctcttacaaaactaacctacagcgccatctggtgttataaaactaccctagagcgtcacctgctttttacatctagcctagagcatcatctgctgttcagaaccatcccagagcaccatttgcagtttacaaactagcctagagtgccatctgcttattacatctagcctaaagtgctatctgctgttaaaaactagcctagagcacaatctgctgtttaaaaactagcctagagcgccatctgctttcgacaattagcttgcattccatctgctgttaaaaactagcctagagcaccatctgctttttaacaactagctgagagcgccattttctgtttaaaaactagcctatagagcgccaactgtagtttaaaagctagcctgctgcgccatctgcgttttacatctagcatagatcatcatctattgttcataaccatcctagagcatcatttgcagtttaaaaattagcctagagcgccatctgctttttaaattaagcctagagcgccatttactgttcagaaccatcctgggcaccatgtgcggtttaaaatctagcatagagcgccatctgctgttcaaaacaagatcagagagaattgcgatgtgttgtgaaaatctcagaaacgatccacgaattgcactgctaaaatgaaaaacaataataatactaataatgaacgcatcatcacagccctacagtaaacggtgccttggtggtgaaagtcgctgccgagaaaacgaagattgtgtcgaaccttctccgctcttccacttttgaagattggcttcggagtatttgtacagaatatctgagccttgtttagtttgtttgggactgtgctttggaaacacaagcatgttgtcggttgcgaggaacagaagctagctagttttcggttgtgtgtgtgtgtgcgcgtgtgtgttttggcgatgaaggtcatgttgacctgaggttgaatcttctcttgttttcctctaaaaggcttcaaacagggttcactgaggcgaatctcaggcatcggaacgacgtcagacgctgtttccccatcaatcattttcttgccctgaaatcgctctactctttcctttacgttcgctttaattccttttgtacgccgaaccaaaagtgatttcaataacggagtttcaggcctaattgtaaatatcctggatacaatcattgggattagttttttccacagctgaaaggttaatgtagtttttaagaacatgtatcattatttgtaagttaaactctctgcatgtcttgaagccatgaggcgttagctaataatttttctaaaaacgcaaaggcaaaaaaaaaaagaaattaaaatggacaaaccttttttacacattttatttttacaatttatttgcttaccttgacatgaatatcccagattataatgtgaccctttttattacagcaaagttctctttattttccatgtttctgttctttcctgtgtattacatataggcaatttataacaaaatgagaaaaaattattgaagaaattttaaaattgaaatatattttatttgaaagtttatggaccttttaaccgcgagctggaacacttgtgtacgcggcgtatcatttgagctgacttgacggttatgagaaatgtatcaagagttttattttttatgcttctttaataaaatcttgtttttttgtttccgtttttgtactgtaaaacaataa

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